Newly Characterized Genes

CHECK HERE FOR DESCRIPTIONS OF NEWLY CHARACTERIZED MAIZE GENES!

With the overwhelming number of genes that are being discovered by phenotypic and sequence analyses, the MaizeGDB staff is missing some that should be included in MaizeGDB. We need your help! Please let us know about new genes that you're working on or have recently read about.

MaizeGDB prefers not to assign formal gene names to gene models based purely on orthology. Known difficulties include inclusivity (there are over 10,000 functionally characterized Arabidopsis genes)* and some likelihood of errors in inferred functions. Unlike gene models, gene names are generally conserved unless differently named genes are found to be allelic. Of particular note, naming priveleges are customarily held by researchers who first confirm function.

We encourage researchers to use the annotation tool on the MaizeGDB gene model pages to add their insights about putative function, especially when not currently part of the Phytozome or Gramene pipelines.

Below is a list of newly reported or newly characterized genes (new reference, new gene product, and/or new variation) with which you may not yet be familiar. The genes are sorted by the last time the gene has been updated. To suggest genes for inclusion in this list, email us and include the gene name, full name, chromosome or bin, and a recent reference.

If you cannot find the gene you would like to recommend in the database, send us an email so that we can add it to the database!

This page is based on our monthly release. The updates are made around 4:00am CST.


         Recommended Genes


One month | Six months | One year | All time

New or updated genes since one month ago. The cutoff date is September 29th, 2020.

Last UpdateGeneFull Name : DescriptionChromosome
or Bin
Gene
Model
Recent ReferenceOrthologsUpdate information
yesterdaysig6 sigma-like factor6:
5.00
GRMZM2G144196
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: December 24th, 2019
Variation: June 24th, 2015
Gene Model: May 8th, 2015
Recommended by Ed Coe:
January 25th, 2007
yesterdaymyb40 myb transcription factor40: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.04
GRMZM2G051256
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: February 18th, 2011
Gene Model: July 28th, 2016
yesterdaymybr96 MYB-related-transcription factor 96: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.03
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: September 25th, 2007
yesterdayrap2 rap2.7 orthologue: negative regulator of flowering time; vgt1 acts as an enhancer (Salvi et al. 2007)
8.06
GRMZM2G700665
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: July 5th, 2019
Variation: July 24th, 2019
Gene Model: November 20th, 2012
yesterdaymyb88 MYB-transcription factor 88: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.00
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: July 25th, 2017
yesterdayg2 golden plant2: (aka g5, pg14, v19, pg-m, bsd1) golden pale-green, weak plants; sheaths whitish yellow-green; pg-m (now g2-pg14::I) of Peterson is a mutable allele that responds to En; small bundle sheath plastids; SSR umc2101, umc2102, umc2103, umc2104, umc2105, umc2106, umc2107, umc2108.pale green seedling lethal, reduced Rubisco and NADP-malic enzyme, small bundle sheath plastids
3.00 - 3.01
GRMZM2G087804
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: July 11th, 2019
Variation: October 24th, 2017
Gene Model: August 30th, 2013
yesterdaylg2 liguleless2: like lg1, less extreme
3.06
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: August 22nd, 2014
Variation: August 20th, 2014
yesterdaypep1 phosphoenolpyruvate carboxylase1: cytosolic C4 isozyme; single copy, similar to C3-PEPCase genes; cDNA complements E. coli mutant; genomic and partial amino acid sequences compare; SSR phi065
9.03
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 1st, 2003
Variation: May 27th, 2020
yesterdayssu1 ribulose bisphosphate carboxylase small subunit1: probed locus; SSRs phi092,phi093
4.08
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 1st, 2003
Variation: September 1st, 2003
yesterdayssu2 ribulose bisphosphate carboxylase small subunit2: probed locus
2.05
GRMZM2G113033
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 1st, 2003
Variation: October 14th, 2014
Gene Model: August 7th, 2014
yesterdaytb1 teosinte branched1: many tillers; ear branches tassel-like; affects apical dominanceGRASSIUS: TCP transcription factor (TCP1)
1.09
   Ricci, WA, et al. 2019. Nature Plants. 0:doi: 10.1038/s41477-019-0547-0     Reference: October 28th, 2020
Gene Product: September 14th, 2016
Variation: February 2nd, 2017
yesterdaybzip40 bZIP-transcription factor 40: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.06
AC203957.3_FG004
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: September 1st, 2003
Gene Model: February 16th, 2018
yesterdaymyb31 MYB31 transcription factor31: R2R3-MYB factor, regulates lignin genes
 
GRMZM2G050305
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8   LOC_Os09g36730 (MSU/TIGR) Reference: October 28th, 2020
Gene Product: February 16th, 2011
Variation: May 6th, 2011
Gene Model: November 30th, 2015
yesterdaybhlh43 bHLH-transcription factor 43: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.08
GRMZM2G165042
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: September 1st, 2003
Gene Model: July 6th, 2017
yesterdaypdk1 pyruvate, orthophosphate dikinase1: cDNA, genomic and peptide sequences; microsatellite mapped (SSRs phi025, phi078, phi081; nc012 ); cytosolic or plastidic, dependent on transcript processingmutant seedlings are pale green and lethal once kernel reserves are exhaused, even when plants were grown under 2% CO2
6.05
GRMZM2G306345
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: July 28th, 2014
Variation: April 18th, 2018
Gene Model: November 21st, 2012
yesterdayereb102 AP2-EREBP-transcription factor 102: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.similar to ethylene-responsive transcription factor RAP2-12 of A. thaliana
7.02
GRMZM2G052667
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: September 1st, 2003
Gene Model: September 6th, 2018
yesterdayzim28 ZIM-transcription factor 28: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
7.02
GRMZM2G116614
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: September 1st, 2003
Gene Model: December 6th, 2016
yesterdaymyb37 MYB-transcription factor 37: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.01
GRMZM2G455869
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: September 1st, 2003
Gene Model: June 15th, 2018
yesterdaycol13 C2C2-CO-like-transcription factor 13: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: June 18th, 2018
yesterdaycol2 C2C2-CO-like-transcription factor 2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: June 18th, 2018
yesterdaycol3 C2C2-CO-like-transcription factor 3: Functions as a repressor of flowering
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: June 18th, 2018
yesterdaycol7 C2C2-CO-like-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: June 18th, 2018
yesterdaycol8 C2C2-CO-like-transcription factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: June 18th, 2018
yesterdaycchh133 Cys2His2 Zinc Finger133: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: December 6th, 2019
yesterdaymyb56 MYB-transcription factor 56: induced by drought and ABA treatments
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: July 25th, 2017
yesterdaynactf49 NAC-transcription factor 49: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: July 8th, 2019
Variation: March 3rd, 2017
yesterdaytcptf10 TCP-transcription factor 10: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 27th, 2019
yesterdaytcptf23 TCP-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 27th, 2019
yesterdaybhlh172 bHLH-transcription factor 172: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8   AT1G51070 (TAIR) Reference: October 28th, 2020
Gene Product: September 14th, 2016
yesterdaymdh6 malate dehydrogenase6: mesophyll cells, C4 photosynthesis; a second copy may not function in photosynthesis
1.07
GRMZM2G129513
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 23rd, 2014
Variation: August 31st, 2010
Gene Model: October 24th, 2013
yesterdayme3 NADP malic enzyme3: chloroplast C4-photosynthesis, delivers CO2 to ribulose bisphosphate carboylase
3.02
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: June 27th, 2019
Variation: September 1st, 2003
yesterdayhb84 Homeobox-transcription factor 84: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.NCBI:putative POX domain/homeobox DNA-binding domain family protein
1.06
GRMZM2G099319
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: December 30th, 2016
Gene Model: December 30th, 2016
yesterdaycah2 carbonic anhydrase2: with cah1 promotes leaf CO2 availability for photosynthesis (Studer et al 2014)
 
GRMZM2G348512
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: February 26th, 2019
Variation: May 25th, 2018
Gene Model: July 31st, 2014
yesterdaymybr17 MYB-related-transcription factor 17: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.09
GRMZM2G071977
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: September 1st, 2003
Gene Model: August 31st, 2018
yesterdayknox6 knotted related homeobox6: similar to knox2 in sequence and expression; cDNA and genomic clones; gene specific probe
5.04
GRMZM2G370332
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 1st, 2003
Variation: August 12th, 2014
Gene Model: August 12th, 2014
yesterdaydof21 C2C2-Dof-transcription factor 21: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.02
GRMZM2G162749
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: January 6th, 2017
Gene Model: January 6th, 2017
yesterdayhmg1 high mobility group protein1: cDNA sequence isolated by immunoscreening, homologous to vertebrate HMG1 family, single or low copy gene
5.03
   Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 1st, 2003
Variation: July 26th, 2013
yesterdaymyb38 myb transcription factor38: cDNA isolated by homology to C1, sequence distinct from C1
 
GRMZM2G084583
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: September 1st, 2003
Variation: October 20th, 2016
Gene Model: February 23rd, 2015
yesterdaylhy1 late hypocotyl elongation protein ortholog1: myb transcription factor - core clock gene (Hayes et al. 2010)
10.03
GRMZM2G474769
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: July 31st, 2016
Variation: December 28th, 2016
Gene Model: December 28th, 2016
yesterdaycah1 carbonic anhydrase1: C4 carbonic anhydrase; higher transcripts in mesophyll cells (Tausta 2014); double mutants with cah2 virutally remove this activity from leaf (Studer et al 2014).
 
GRMZM2G121878
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: February 26th, 2019
Variation: May 25th, 2018
Gene Model: July 31st, 2014
yesterdaymab16 math-btb16:
 
GRMZM2G172210
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: June 6th, 2014
Variation: May 10th, 2017
Gene Model: February 14th, 2017
yesterdaycct2 CO CO-LIKE TIMING OF CAB1 protein domain2: photoperiod response locus; confers later flowering in teosintes under longer day lengths; knockout mutant causes early flowering under long days
 
GRMZM2G004483
Ricci, WA, et al. 2019. Nature Plants. 0:doi: 10.1038/s41477-019-0547-0     Reference: October 28th, 2020
Gene Product: June 18th, 2018
Variation: December 27th, 2017
Gene Model: December 27th, 2017
yesterdaycol18 C2C2-CO-like-transcription factor 18:
 
GRMZM2G148772
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: June 18th, 2018
Gene Model: June 16th, 2018
yesterdaynactf23 NAC-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models. similar to protein ATAF2 of A. thaliana
8.08
GRMZM2G068973
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Variation: March 31st, 2005
Gene Model: June 14th, 2019
yesterdaymybst1 single-repeat Myb protein1:
9.04
GRMZM2G034110
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: December 24th, 2015
Variation: January 26th, 2010
Gene Model: December 24th, 2015
yesterdayglk1 G2-like1: g2 golden2 paralog; specifically affects mesophyll chloroplast assembly, but not bundle sheath chloroplast assembly (Wang et al 2013)
9.00
GRMZM2G026833
Tu, XY, et al. 2020. Nature communications. 0:doi: 10.1038/s41467-020-18832-8     Reference: October 28th, 2020
Gene Product: July 11th, 2019
Variation: May 9th, 2009
Gene Model: September 27th, 2012
2 days agoct2 compact plant2: semi-dwarf plant, 1/3 height; shortened internodes; club tassel, fasciated ear
1.01 - 1.02
GRMZM2G064732
An, YX et al. 2020. BMC Plant Biology 20:490     Reference: October 27th, 2020
Gene Product: September 16th, 2013
Variation: September 20th, 2013
Gene Model: September 16th, 2013
2 days agotps11 terpene synthase11: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
10.03
GRMZM2G127087
Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: September 3rd, 2008
Variation: September 3rd, 2008
Gene Model: August 22nd, 2012
2 days agora1 ramosa1: ear and tassel many-branched; tassel branches taper to tip
7.02
   An, YX et al. 2020. BMC Plant Biology 20:490     Reference: October 27th, 2020
Gene Product: April 11th, 2007
Variation: August 20th, 2010
2 days agowab1 Wavy auricles in blades1: dominant confers auricle tissue in blade portion of leafrecessive mutants showed extremely acute tassel branch angles accompanied by a significant reduction in the size of the pulvinus compared with normal plants
2.06 - 2.07
GRMZM2G110242
An, YX et al. 2020. BMC Plant Biology 20:490   LOC_Os09g24480 (MSU/TIGR)
Os09g0410500 (Gramene)
Reference: October 27th, 2020
Gene Product: September 14th, 2016
Variation: November 2nd, 2014
Gene Model: November 2nd, 2014
2 days agofea3 fasciated ear3: ear tip broad and branched, typically splitting and showing ring fasciation to form a hollow ear.
 
GRMZM2G166524
An, YX et al. 2020. BMC Plant Biology 20:490   At3g25670 (TAIR)
LOC_Os01g02060 (MSU/TIGR)
Reference: October 27th, 2020
Gene Product: July 10th, 2019
Variation: May 18th, 2016
Gene Model: May 18th, 2016
2 days agonactf48 NAC-transcription factor 48: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.06
GRMZM2G054252
Sahito, JH et al. 2020. Plants 9:1447     Reference: October 27th, 2020
Variation: January 27th, 2017
Gene Model: January 27th, 2017
2 days agocyp33 cytochrome P450 CYP81A39: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
1.10
GRMZM2G154828
Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: March 25th, 2019
Gene Model: February 15th, 2020
2 days agovt2 vanishing tassel2: inflorescence development; TRP-dependent auxin synthesis
 
GRMZM2G127308
An, YX et al. 2020. BMC Plant Biology 20:490   AT1G70560 (TAIR) Reference: October 27th, 2020
Gene Product: April 30th, 2011
Variation: June 24th, 2011
Gene Model: May 2nd, 2012
2 days agocyp22 cytochrome P-450 22: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
 
GRMZM2G067591
Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: March 25th, 2019
Gene Model: February 26th, 2018
2 days agotps12 terpene synthase12: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
 
   Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: September 3rd, 2008
2 days agotps13 terpene synthase13: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
 
GRMZM2G028306
Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: September 3rd, 2008
Gene Model: October 27th, 2020
2 days agocyp29 cytochrome P450 CYP71Z19: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
 
GRMZM2G122654
Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: March 25th, 2019
Gene Model: October 27th, 2020
2 days agocyp30 cytochrome P450 CYP71Z16: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
 
   Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: March 25th, 2019
2 days agocyp31 cytochrome P450 CYP81A37: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
 
GRMZM2G118809
Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: March 25th, 2019
Gene Model: October 27th, 2020
2 days agocyp32 cytochrome P450 CYP81A38: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
 
GRMZM2G154870
Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: March 25th, 2019
Gene Model: October 27th, 2020
2 days agonactf136 NAC-transcription factor 136: ZmNAC9 homologous gene
 
   Sahito, JH et al. 2020. Plants 9:1447     Reference: October 27th, 2020
Gene Product: July 8th, 2019
2 days agomca1 metacaspase1: encodes a type I metacaspase
 
GRMZM2G155422
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca2 metacaspase2: encodes a type I metacaspase
 
GRMZM2G035928
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca3 metacaspase3: encodes a type I metacaspase
 
GRMZM2G120069
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca4 metacaspase4: encodes a type I metacaspase
 
GRMZM2G120079
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca5 metacaspase5: encodes a type I metacaspase
 
GRMZM2G125314
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca6 metacaspase6: encodes a type I metacaspase
 
GRMZM2G132238
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca7 metacaspase7: encodes a type I metacaspase
 
GRMZM2G337548
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca8 metacaspase8: encodes a type I metacaspase
 
GRMZM2G320206
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca9 metacaspase9: encodes a type II metacaspase
 
GRMZM2G047274
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca10 metacaspase10: encodes a type II metacaspase
 
GRMZM2G066041
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agomca11 metacaspase11: encodes a type II metacaspase
 
GRMZM2G022799
Luan, Q-L et al. 2020. Plant J pp.doi: 10.1111/tpj.15047     Reference: October 27th, 2020
Gene Product: October 27th, 2020
Gene Model: October 27th, 2020
2 days agocko4 cytokinin oxidase 4:
 
GRMZM5G817173
An, YX et al. 2020. BMC Plant Biology 20:490     Reference: October 27th, 2020
Gene Product: April 4th, 2014
Gene Model: March 21st, 2014
2 days agotps6 terpene synthase6: involved in pathway leading to biosynthesis of zealexins (Ding et al., 2020)
10.03
GRMZM2G127087
Ding, YZ et al. 2020. Nature Plants pp.doi: 10.1038/s41477-020-00787-9     Reference: October 27th, 2020
Gene Product: September 3rd, 2008
Variation: May 28th, 2012
Gene Model: May 28th, 2012
3 days agosdg118 set domain gene118:
8.06
   Springer, N; Napoli, CM; Selinger, D; Pandey, R; Cone, KC; Chandler, V; Kaeppler, HF; Kaeppler, S. 2003. Plant Physiol. 132:907-925     Reference: October 16th, 2003
Gene Product: June 30th, 2017
Variation: October 26th, 2020
3 days agogbf1 G-box binding factor1: anoxia induced, nuclear, basic-region leucine zipper protein; low copy number; cDNA clone
6.07
GRMZM2G011932
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: September 1st, 2003
Variation: December 7th, 2012
Gene Model: July 27th, 2016
3 days agomads68 MADS-transcription factor 68: Ortholog of rice MADS47; regulates zein gene transcription by interacting with o2 (Qiao et al., 2016)
1.02
GRMZM2G059102
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044   LOC_Os03g08754 (MSU/TIGR) Reference: October 26th, 2020
Variation: April 15th, 2016
Gene Model: April 15th, 2016
3 days agobt1 brittle endosperm1: mature kernel collapsed, angular, often translucent and brittle (alleles sh3, sh5)
5.04
   Hu, YF et al. 2020. Plant J pp.doi: 10.1111/tpj.15043     Reference: October 26th, 2020
Gene Product: February 24th, 2015
Variation: March 16th, 2018
3 days agolg3 liguleless3: dominant Lg3 plants lack ligule; leaves upright, broad, often concave and pleated; homeobox similar to knox5 and knox11
3.04
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: August 22nd, 2014
Variation: March 16th, 2015
3 days agosh2 shrunken2: inflated, transparent, sweet kernels collapse on drying, becoming angular and brittle; endosperm ADPG pyrophosphorylase subunit (compare bt2); application: "supersweet" sweet corn - kernels sugar-sweet for long period
3.09
   Hu, YF et al. 2020. Plant J pp.doi: 10.1111/tpj.15043     Reference: October 26th, 2020
Gene Product: November 4th, 2014
Variation: January 9th, 2019
3 days agosu1 sugary1: endosperm wrinkled and translucent when dry; starch debranching enzyme I absent in developing endosperm, phytoglycogen but no debranching enzyme in germinating seeds; su1-am sugary-amylaceous; su1-st recessive starchy; application: the "sweet corn" gene - recessive kernels are creamy-sweet at milk stage
4.05
   Hu, YF et al. 2020. Plant J pp.doi: 10.1111/tpj.15043     Reference: October 26th, 2020
Gene Product: April 21st, 2016
Variation: June 6th, 2016
3 days agosu2 sugary2: endosperm glassy, translucent, sometimes wrinkled
6.04 - 6.05
   Hu, YF et al. 2020. Plant J pp.doi: 10.1111/tpj.15043     Reference: October 26th, 2020
Gene Product: October 14th, 2016
Variation: October 7th, 2010
3 days agoprh24 protein phosphatase homolog24:
5.00
GRMZM2G144109
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 13th, 2018
3 days agoereb24 AP2-EREBP-transcription factor 24: similar to Arabidopsis AP2-like ethylene-responsive transcription factorLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
GRMZM2G086573
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Variation: September 1st, 2003
Gene Model: February 21st, 2018
3 days agonfya1 nuclear transcription factor y subunit a1:
1.02
GRMZM2G000686
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: August 9th, 2016
Variation: May 18th, 2016
Gene Model: May 18th, 2016
3 days agoereb53 AP2-EREBP-transcription factor 53: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044   LOC_Os1g67410 (MSU/TIGR) Reference: October 26th, 2020
Gene Product: July 5th, 2019
3 days agoca2p4 CCAAT-HAP2-transcription factor4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: August 9th, 2016
3 days agoca3p4 CCAAT-HAP3-transcription factor 34: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: August 9th, 2016
3 days agoca5p3 CCAAT-HAP5-transcription factor 53: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: August 9th, 2016
3 days agohsftf24 HSF-transcription factor 24: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: May 15th, 2020
3 days agonactf108 NAC-transcription factor 108: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.functions as a negative regulator of the stay‐green trait
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: July 8th, 2019
Variation: May 4th, 2019
3 days agoub3 unbranched3: double mutant shows decrease in tassel branch number
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: July 5th, 2019
Variation: December 17th, 2014
3 days agowrky29 WRKY-transcription factor 29: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: July 24th, 2017
3 days agobzip4 bZIP-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: August 21st, 2018
Variation: August 21st, 2018
3 days agogrftf8 GRF-transcription factor 8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
GRMZM2G041223
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Variation: September 1st, 2003
Gene Model: February 22nd, 2018
3 days agosbe1 starch branching enzyme1: maize kernel cDNA sequence is similar to starch branching enzyme I of bacteria, encodes a putative 64-amino acid plastid transit peptide (aka sbe1)
5.03
   Hu, YF et al. 2020. Plant J pp.doi: 10.1111/tpj.15043     Reference: October 26th, 2020
Gene Product: September 1st, 2003
Variation: January 5th, 2018
3 days agosbe3 starch branching enzyme3:
8.06
GRMZM2G005298
Hu, YF et al. 2020. Plant J pp.doi: 10.1111/tpj.15043     Reference: October 26th, 2020
Gene Product: June 6th, 2011
Variation: June 1st, 2011
Gene Model: September 23rd, 2018
3 days agosar1 secretion-associated Ras-related homolog1: endosperm cDNA 5C03G12 (uaz151), similar to Arabidopsis sar1 homologue
3.04
   Schnable, J; Freeling, M. 2011. PLoS One 6(3):e17855. doi:10.1371/journal.pone.0017855     Reference: September 27th, 2011
Gene Product: October 26th, 2020
Variation: March 16th, 2015
3 days agobip1 Binding protein homolog1: cDNA clone, protein body, putative molecular chaperone of hsp70 family
5.03
   Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: September 1st, 2003
Variation: October 30th, 2012
3 days agonlp7 NLP-transcription factor 7: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
1.01
GRMZM2G109509
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: December 3rd, 2019
Gene Model: October 7th, 2017
3 days agoiso3 isoamylase-type starch debranching enzyme3:
 
GRMZM2G150796
Hu, YF et al. 2020. Plant J pp.doi: 10.1111/tpj.15043     Reference: October 26th, 2020
Gene Product: October 25th, 2011
Variation: April 7th, 2011
Gene Model: July 28th, 2016
3 days agocca1 circadian clock associated1: myb transcription factor - clock gene
 
GRMZM2G014902
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: July 31st, 2016
Variation: March 18th, 2011
Gene Model: July 30th, 2016
3 days agopx17 peroxidase17:
 
GRMZM2G427903
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: September 18th, 2015
Gene Model: October 26th, 2020
3 days agoccp7 cysteine protease7:
 
GRMZM2G077479
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: May 23rd, 2019
Gene Model: October 26th, 2020
3 days agosar2 secretion-associated Ras-related homolog2:
 
GRMZM2G181536
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: October 26th, 2020
Gene Model: October 26th, 2020
3 days agobzip60 bZIP transcription factor60: endoplasmic reticulum [ER] stress response
9.03
GRMZM2G025812
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Variation: August 26th, 2020
Gene Model: April 16th, 2013
3 days agodbf1 DRE-binding protein 1:
1.07
GRMZM2G061487
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: April 10th, 2013
Variation: July 27th, 2005
Gene Model: July 27th, 2016
3 days agodbb6 double B-box zinc finger protein6:
5.05
GRMZM2G095299
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: May 10th, 2017
Variation: May 10th, 2017
Gene Model: May 10th, 2017
3 days agobi1 bax inhibitor1:
5.03
GRMZM2G029087
Ko, DK; Brandizzi, F. 2020. Plant J pp.doi: 10.1111/tpj.15044     Reference: October 26th, 2020
Gene Product: October 26th, 2020
Gene Model: October 26th, 2020
4 days agomet6 DNA methyl transferase6:
8.05
   Shafiq, S et al. 2020. Int J Mol Sci 21:6959     Reference: September 23rd, 2020
Gene Product: April 6th, 2018
Variation: October 25th, 2020
6 days agocep8 C-terminally encoded peptide8:
8.03
GRMZM2G061450
Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
Gene Model: August 30th, 2019
6 days agozim32 ZIM-transcription factor 32: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Bai, YH et al. 2011. Genomics 98:128-136     Reference: October 23rd, 2020
Variation: February 17th, 2019
6 days agocep7 C-terminally encoded peptide7:
7.02
GRMZM2G446946
Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
Gene Model: September 6th, 2018
6 days agomtopvib1 meiotic TopoVI B subunit1: mutant plants exhibited normal vegetative growth but male and female sterility
 
GRMZM2G439198
Jing, JL et al. 2020. Plant Physiol pp.doi: 10.1104/pp.20.00933     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Variation: October 23rd, 2020
Gene Model: October 21st, 2020
6 days agocep2 C-terminally encoded peptide2:
 
GRMZM2G156026
Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
Gene Model: October 23rd, 2020
6 days agocep3 C-terminally encoded peptide3:
 
AC205968.3_FG001
Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
Gene Model: October 23rd, 2020
6 days agocep4 C-terminally encoded peptide4:
 
AC187283.3_FG005
Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
Gene Model: October 23rd, 2020
6 days agocep6 C-terminally encoded peptide6:
 
AC206165.3_FG009
Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
Gene Model: October 23rd, 2020
6 days agocep9 C-terminally encoded peptide9:
 
   Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
6 days agocep10 C-terminally encoded peptide10:
 
   Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
6 days agoAW036917  :
6.05
GRMZM2G106218
    Variation: October 23rd, 2020
Gene Model: May 30th, 2017
6 days agocep5 C-terminally encoded peptide5:
6.05
GRMZM2G148964
Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
Variation: March 31st, 2005
Gene Model: October 23rd, 2020
6 days agocep1 C-terminally encoded peptide1:
1.07
GRMZM2G007969
Aggarwal, S et al. 2020. Physiology and Molecular Biology of Plants 26:2019-2033     Reference: October 23rd, 2020
Gene Product: October 23rd, 2020
Gene Model: February 11th, 2020
7 days agopza00067  :
5.04
GRMZM2G151916
    Variation: September 25th, 2007
Gene Model: October 22nd, 2020
7 days agolw2 lemon white2: like lw1
5.05
GRMZM2G137409
Wang, HH et al. 2020. Nature communications 11:5346     Reference: October 22nd, 2020
Gene Product: February 8th, 2019
Variation: October 22nd, 2020
Gene Model: February 8th, 2019
7 days agohyd3 hydroxylase3: beta-carotene hydroxylase
 
GRMZM2G152135
Wang, HH et al. 2020. Nature communications 11:5346     Reference: October 22nd, 2020
Gene Product: December 13th, 2011
Variation: October 22nd, 2020
Gene Model: April 9th, 2013
7 days agodxs2 deoxy xylulose synthase 2: root specific; function inferred from sequence and expression pattern comparison with Medicago trunculata genes
9.03
GRMZM2G493395
Wang, HH et al. 2020. Nature communications 11:5346     Reference: October 22nd, 2020
Gene Product: August 17th, 2004
Variation: October 22nd, 2020
Gene Model: December 9th, 2011
7 days agohppd1 4-hydroxyphenylpyruvate dioxygenase 1:
5.04
GRMZM2G088396
Wang, HH et al. 2020. Nature communications 11:5346     Reference: October 22nd, 2020
Gene Product: June 2nd, 2005
Variation: October 22nd, 2020
Gene Model: July 28th, 2016
8 days agoeng1 endo-1,3-1,4-beta-D-glucanase1: coleoptile enzyme, orthologous to rice enzyme; located in cell wall, IAA- stimulated coleoptile growth inhibited by antibody
4.05
GRMZM2G073079
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Variation: May 20th, 2009
Gene Model: June 1st, 2017
Recommended by Ed Coe:
January 8th, 2008
8 days agopmi2 phosphomannose isomerase2:
4.02
GRMZM2G456471
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: April 11th, 2020
8 days agoask1 aspartate kinase1: lysine-threonine resistance in cultures and seedlings, increased threonine in kernels, altered kinetics of aspartate kinase
1.12
GRMZM2G024686
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: September 10th, 2010
Gene Model: October 21st, 2020
8 days agophi1 phosphohexose isomerase1: electrophoretic mobility; null allele is known; cytosolic; dimeric; intralocus hybrid bands occur; cDNA clone pGPI1a (Lal & Sachs, 1995)
1.11 - 1.11
GRMZM2G065083
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: October 1st, 2014
Gene Model: August 25th, 2014
8 days agodhn1 dehydrin1: protein induced by abscisic acid; cDNA sequence agrees with amino acid sequence (aka dhn3, rab17, rny1)
6.05
   Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: November 20th, 2012
8 days agoask2 aspartate kinase2:
2.06
GRMZM2G052935
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: February 6th, 2018
Gene Model: February 6th, 2018
8 days agosod2 superoxide dismutase2: electrophoretic mobility; cytosolic; Cu-Zn dimeric
7.05
   Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: February 12th, 2007
Variation: August 2nd, 2013
8 days agocta1 chitinase A1: cDNA sequence corresponds to peptide sequence of maize 28kDa chitinase A
2.04
   Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 days agosbp1 SBP-domain protein1: cDNA sequence, SSR's umc1575, umc1624
5.04
GRMZM2G111136
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: July 5th, 2019
Variation: October 8th, 2011
Gene Model: December 18th, 2014
8 days agodps1 dihydrodipicolinate synthase1: cDNA complements E. coli mutant (AT997dapA-) blocked in DHPS (aka dhp1)
 
GRMZM2G027835
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: January 5th, 2015
8 days agopmm1 phosphomannomutase1:
2.00
GRMZM2G165535
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: February 23rd, 2018
8 days agodhn3 dehydrin3:
4.06
GRMZM2G373522
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: August 5th, 2017
Variation: June 18th, 2011
Gene Model: October 16th, 2016
8 days agohsp101 heat-shock protein 101: normal primary roots contain protein HSP101 conferring acclimation at 40C, to 50C shock; null mutants fail to acclimate and shock is lethal
6.07
   Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: December 22nd, 2012
8 days agohsp18f heat shock protein18f: induction by heat shock is developmentally constitutive
3.02
   Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: July 18th, 2014
8 days agoakh2 aspartate kinase homoserine dehydrogenase2: cDNA sequence 75% homologous to carrot threonine sensitive AK-HSDH bifunctional enzyme
2.06
   Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: September 1st, 2003
8 days agogmp2 mannose-1-phosphate guanylyltransferase2:
8.07
   Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Variation: July 29th, 2004
8 days agodapf1 diaminopimelate+epimerase1:
1.05
GRMZM2G130332
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: February 9th, 2020
8 days agogldh1 galactono lactone dehydrogenase1: ascorbate biosynthesis, based on orthology to the Arabidopsis gene vtc2.
2.05
GRMZM2G469969
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: March 29th, 2013
Gene Model: March 29th, 2013
8 days agopld2 phospholipase D2:
 
GRMZM2G061969
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: August 9th, 2016
Gene Model: August 9th, 2016
8 days agoprx39 peroxidase39:
 
GRMZM2G085967
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: September 18th, 2015
Gene Model: September 22nd, 2018
8 days agohsp8 heat shock protein8:
 
GRMZM2G080724
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: January 15th, 2019
Gene Model: January 14th, 2019
8 days agoaas8 auxin amido synthetase8: encodes an auxin-responsive indole-3-acetic acid-amido synthetase (GH3)
 
GRMZM2G053338
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: October 21st, 2019
Gene Model: October 21st, 2019
8 days agoasd1 aspartate-semialdehyde dehydrogenase1:
5.01
GRMZM2G076885
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agodhn15 dehydrin15:
 
GRMZM2G147014
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: August 5th, 2017
Gene Model: July 3rd, 2020
8 days agodps2 dihydrodipicolinate synthase2:
 
GRMZM2G556131
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Gene Model: October 21st, 2020
8 days agodapf2 diaminopimelate+epimerase2:
 
AC182617.3_FG001
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agolysA1 dihydrodipicolinate decarboxylase1:
 
GRMZM2G020446
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agolysA2 dihydrodipicolinate decarboxylase2:
 
GRMZM2G090722
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agodapat1 diaminopimelate aminotransferase1:
 
GRMZM2G010328
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agodapat2 diaminopimelate aminotransferase2:
 
GRMZM2G415117
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agodapat3 diaminopimelate aminotransferase3:
 
GRMZM2G119150
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agodapB1 dihydrodipicolinate reductase1:
 
GRMZM2G104575
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agodapB2 dihydrodipicolinate reductase2:
 
GRMZM2G090241
Liu, YW et al. 2016. PLoS One 11:e0148287     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agogmp1 mannose-1-phosphate guanylyltransferase1:
 
GRMZM2G119300
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agopmi1 phosphomannose isomerase1:
 
GRMZM2G121066
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agogpp1 galactose-1-phosphate phosphatase1:
 
GRMZM2G034417
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: October 21st, 2020
8 days agophi3 phosphohexose isomerase3:
 
GRMZM2G140614
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Gene Model: October 21st, 2020
8 days agophi2 phosphohexose isomerase2:
 
GRMZM2G076075
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Gene Model: October 21st, 2020
8 days agogaldh1 galactose dehydrogenase1:
10.03
GRMZM2G126002
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Gene Model: June 29th, 2020
8 days agogme1 GDP-mannose-3'5'-epimerase1:
1.08
GRMZM2G124434
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Variation: March 31st, 2005
Gene Model: February 14th, 2019
8 days agomagi2594  :
1.11
GRMZM2G352415
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Variation: April 24th, 2006
Gene Model: February 16th, 2020
8 days agogme2 GDP-mannose-3'5'-epimerase2:
4.02
GRMZM2G138907
Yu, CM et al. 2020. Plant Sci pp.doi: 10.1016/j.plantsci.2020.110676     Reference: October 21st, 2020
Gene Product: October 21st, 2020
Variation: September 25th, 2007
Gene Model: April 11th, 2020
8 days agoglx1 glyoxylase1:
10.03
GRMZM2G181192
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: October 13th, 2015
Variation: March 5th, 2008
Gene Model: January 23rd, 2015
8 days agoppo1 polyphenol oxidase1: vegetative meristem cDNA 7C02D02
10.03
GRMZM5G851266
Blein-Nicolas, M et al. 2020. Genome Res pp.doi: 10.1101/gr.255224.119     Reference: October 21st, 2020
Gene Product: September 1st, 2003
Variation: January 21st, 2015
Gene Model: January 21st, 2015
9 days agopsei2 cystatin2: cDNA expressed in E. coli inhibits cysteine proteinases; sequence and gene product activity distinct from psei1
8.08
   van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: April 21st, 2008
Variation: January 15th, 2015
9 days agotps23 terpene synthase23: part of defense response to herbivory by western maize rootworm and Spodoptera littoralis but not expressed highly in most North American maize
10.03
GRMZM2G127336
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: July 21st, 2008
Variation: November 21st, 2017
Gene Model: August 22nd, 2012
9 days agobx1 benzoxazinless1: plastid localized, committed step in cyclic hydroxamates/DIMBOA synthesis; insect resistance in young seedlings; SSR umc1022
4.00
GRMZM2G085381
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: October 14th, 2011
Variation: April 12th, 2019
Gene Model: October 14th, 2011
9 days agopal1 phenylalanine ammonia lyase homolog1: leaf cDNA csu156 similar to rice phenylalanine ammonia lyase, single copy
5.05
   van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: September 6th, 2019
Variation: September 24th, 2014
9 days agostp1 sugar transport1: leaf cDNA csu142 similar to yeast plasma membrane sugar transport protein, single copy
8.03
   van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: September 1st, 2003
Variation: August 26th, 2015
9 days agosci1 subtilisin-chymotrypsin inhibitor homolog1: cDNA from germinating embryo infected with Fusarium moniliforme; similar to subtilisin-chymotrypsin inhibitor
8.05
   van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: September 1st, 2003
Variation: August 25th, 2015
9 days agoopr7 12-oxo-phytodienoic acid reductase7: peroxisomal; jasmonic acid synthesis; opr7 opr8 double mutants are feminized, and have increased susceptibiliy to insect and fungal pests
 
GRMZM2G148281
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: September 3rd, 2010
Variation: December 16th, 2019
Gene Model: November 25th, 2013
9 days agolox5 lipoxygenase5:
5.02
GRMZM2G102760
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: January 3rd, 2018
Variation: April 20th, 2018
Gene Model: June 10th, 2014
9 days agoprp4 pathogenesis related protein4:
7.00
GRMZM2G465226
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: July 25th, 2018
Variation: August 29th, 2011
Gene Model: November 20th, 2014
9 days agonced5 nine-cis-epoxycarotenoid dioxygenase5:
 
GRMZM2G417954
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: September 20th, 2012
Variation: September 1st, 2011
Gene Model: September 20th, 2012
9 days agosaur2 small auxin up RNA2:
 
GRMZM2G156470
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: September 1st, 2003
Gene Model: March 25th, 2020
9 days agotsah1 tryptophan synthase A homolog1: Homologous to tryptophan synthase alpha subunit but does occur as part of native tryptophan synthase. Localized in the cytosol (Kriechbaumer et al 2008). Function unknown.
1.11
GRMZM2G046163
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: October 14th, 2011
Variation: August 15th, 2014
Gene Model: September 10th, 2018
9 days agoacs6 1-aminocyclopropane-1-carboxylate synthase6:
1.10
GRMZM2G054361
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: May 16th, 2016
Variation: August 4th, 2008
Gene Model: January 21st, 2016
9 days agopsei9 cystatin9: apoplastic; necessary for Ustilago maydis infection;induced by U. maydis to bypass host immunity provided by apoplostic proteases(van der Linde 2012)
4.03
AC196110.4_FG004
van Doan, C et al. 2020. Plant Cell Environ pp.doi: 10.1111/pce.13919     Reference: October 20th, 2020
Gene Product: April 21st, 2008
Variation: April 21st, 2008
Gene Model: February 12th, 2014
10 days agolhca1 light harvesting complex A1: leaf cDNA csu800 similar to photosystem I antenna protein
2.08
GRMZM2G038519
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: September 1st, 2003
Variation: February 18th, 2015
Gene Model: February 18th, 2015
10 days agobx14 benzoxazinone synthesis14: encodes an O-methyltransferase that converts DIM2BOA-Glc to HDM2BOA-Glc.
2.05
GRMZM2G127418
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: July 8th, 2013
Variation: June 20th, 2016
Gene Model: June 20th, 2016
10 days agovp1 viviparous1: embryo fails to become dormant, viable if transplanted; some alleles dormant; chlorophyll and carotenoids unaffected; anthocyanins in aleurone suppressed (aka vp4); cDNA
3.05
   Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: July 29th, 2015
Variation: August 22nd, 2013
10 days agoy1 yellow endosperm1: reduced carotenoid pigments in endosperm; some alleles affect chlorophyll in seedlings (e.g. y1-8549, y1-pb)
6.01
GRMZM2G300348
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: December 14th, 2011
Variation: August 26th, 2014
Gene Model: September 22nd, 2011
10 days agobnlg2271  :
7.03
GRMZM2G313643
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Variation: September 1st, 2003
Gene Model: September 10th, 2018
10 days agoereb197 AP2-EREBP-transcription factor 197: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
2.02
GRMZM2G174784
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Variation: September 1st, 2003
Gene Model: February 17th, 2018
10 days agocchh2 Cys2His2 Zinc Finger2: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: December 6th, 2019
10 days agosbp4 (GRASSIUS) SBP-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: July 5th, 2019
10 days agozp15 zein protein, 15kDa15: high methionine; genomic blot indicates one or two copies
6.01 - 6.02
GRMZM2G086294
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: July 8th, 2013
Variation: August 27th, 2013
Gene Model: July 8th, 2013
10 days agoumc2297  :
5.03
GRMZM2G047175
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Variation: September 25th, 2007
Gene Model: June 23rd, 2018
10 days agolaz8 lazarus ortholog8: functions as a transmembrane organic solute transporter (Liu et al., 2019)
 
GRMZM2G373717
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: July 27th, 2019
Gene Model: July 27th, 2019
10 days agouce20 ubiquitin-conjugating enzyme20: homology to Arabidopsis thaliana SUMO-conjugating enzyme 1 (SCE1)
 
GRMZM2G433968
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: December 19th, 2019
Gene Model: December 19th, 2019
10 days agopfk3 phosphofructokinase3:
 
GRMZM2G401970
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: January 8th, 2020
Gene Model: January 8th, 2020
10 days agokcs22 3-ketoacyl-CoA synthase22:
 
GRMZM2G168956
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: November 1st, 2018
Gene Model: February 13th, 2020
10 days agoppr375 pentatricopeptide repeat protein375: ortholog of Arabidopsis MTL1
 
GRMZM2G030263
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480   AT5G64320 (TAIR) Reference: October 19th, 2020
Gene Product: December 27th, 2016
Gene Model: September 17th, 2020
10 days agocry1 cryptochrome1:
5.05
GRMZM2G024739
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: August 31st, 2018
Gene Model: August 31st, 2018
10 days agoIDP2400  :
1.12
GRMZM2G021642
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Variation: March 31st, 2005
Gene Model: February 16th, 2019
10 days agoIDP723  :
2.05
GRMZM2G008864
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Variation: March 31st, 2005
Gene Model: February 19th, 2019
10 days agodar3 monodehydroascorbate reductase3:
10.03
GRMZM5G828229
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: October 15th, 2020
Variation: March 31st, 2005
Gene Model: January 3rd, 2018
10 days agovp14 viviparous14: viviparous; yellow endosperm; abscisic acid biosynthesis; SSR umc1218
1.08
GRMZM2G014392
Li, J et al. 2020. J Exp Bot pp.doi: 10.1093/jxb/eraa480     Reference: October 19th, 2020
Gene Product: September 20th, 2012
Variation: June 25th, 2007
Gene Model: May 13th, 2011
11 days agohk2 histidine kinase2: cytokinin responsive histidine protein kinase
3.05
   Yonekura-Sakakibara, K; Kojima, M; Yamaya, T; Sakakibara, H. 2004. Plant Physiol. 134:1654-1661     Reference: July 7th, 2004
Gene Product: May 20th, 2016
Variation: October 18th, 2020
12 days agolyce1 lycopene epsilon cyclase1: determines qualitative composition of endosperm carotenoids
8.05
GRMZM2G012966
Dutta, S et al. 2020. Mol Genet Genomics pp.doi: 10.1007/s00438-020-01734-1     Reference: October 17th, 2020
Gene Product: December 10th, 2011
Variation: October 3rd, 2011
Gene Model: October 3rd, 2011
12 days agowc1 white cap1: dominant Wc1 kernels have pale yellow endosperm if Y1 (pearly white with y1); whiteness is emphasized in soft-starch crowns
9.07
   Dutta, S et al. 2020. Mol Genet Genomics pp.doi: 10.1007/s00438-020-01734-1     Reference: October 17th, 2020
Gene Product: September 20th, 2012
Variation: October 5th, 2012
12 days agocbl1 calcineurin B-like1:
 
GRMZM2G107575
Chen, XJ et al. 2020. Physiol Plant pp.doi: 10.1111/ppl.13244     Reference: October 17th, 2020
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
12 days agocipk42 calcineurin B-like-interacting protein kinase42: mutant plants have less branched tassel and impaired salt stress tolerance at the seedling stage
 
GRMZM2G011919
Chen, XJ et al. 2020. Physiol Plant pp.doi: 10.1111/ppl.13244     Reference: October 17th, 2020
Gene Product: August 25th, 2018
Variation: October 17th, 2020
Gene Model: October 17th, 2020
12 days agocbl4 calcineurin B-like2:
6.06
GRMZM2G001221
Chen, XJ et al. 2020. Physiol Plant pp.doi: 10.1111/ppl.13244     Reference: October 17th, 2020
Gene Product: October 19th, 2016
Gene Model: October 19th, 2016
12 days agoIDP1657  :
2.07
GRMZM2G154904
    Variation: March 31st, 2005
Gene Model: October 17th, 2020
13 days agosig1 sigma70-like-transcription factor 1:
1.03
GRMZM2G003182
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: December 24th, 2019
Gene Model: October 16th, 2020
Recommended by Ed Coe:
January 25th, 2007
13 days agopropep1 precursor elicitor peptide1:
 
GRMZM5G899080
Poretsky, E et al. 2020. Plant J pp.doi: 10.1111/tpj.15022     Reference: October 15th, 2020
Gene Product: October 16th, 2020
Variation: March 4th, 2011
Gene Model: May 17th, 2013
13 days agosig3 Sigma70-like-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
GRMZM2G003182
Hendron, R-W; Kelly, S. 2019. Plant Physiol pp.doi: 10.1104/pp.19.01053     Reference: December 23rd, 2019
Gene Product: December 24th, 2019
Gene Model: October 16th, 2020
13 days agopropep2 precursor elicitor peptide2:
 
GRMZM2G177412
Poretsky, E et al. 2020. Plant J pp.doi: 10.1111/tpj.15022     Reference: October 15th, 2020
Gene Product: October 16th, 2020
Gene Model: May 17th, 2013
13 days agofdx3 ferredoxin3: ubiquitous, cDNA clone, gene specific probe, amino acid sequence; SSR umc1064, pFD3
1.11
GRMZM2G053458
Kaur, K et al. 2020. J Biosciences 45:132     Reference: October 16th, 2020
Gene Product: September 1st, 2003
Variation: January 29th, 2015
Gene Model: July 25th, 2017
13 days agolox9 lipoxygenase9:
1.02
GRMZM2G017616
Kaur, K et al. 2020. J Biosciences 45:132     Reference: October 16th, 2020
Gene Product: January 3rd, 2018
Variation: June 12th, 2014
Gene Model: October 23rd, 2013
13 days agopropep3 precursor elicitor peptide3: herbivore defense signal
 
GRMZM2G339117
Poretsky, E et al. 2020. Plant J pp.doi: 10.1111/tpj.15022     Reference: October 15th, 2020
Gene Product: October 16th, 2020
Gene Model: May 17th, 2013
13 days agopropep4 precursor elicitor peptide4:
 
GRMZM2G141133
Poretsky, E et al. 2020. Plant J pp.doi: 10.1111/tpj.15022     Reference: October 15th, 2020
Gene Product: October 16th, 2020
Gene Model: May 17th, 2013
13 days agopropep5 precursor elicitor peptide5:
 
GRMZM2G141071
Poretsky, E et al. 2020. Plant J pp.doi: 10.1111/tpj.15022     Reference: October 15th, 2020
Gene Product: October 16th, 2020
Gene Model: May 17th, 2013
13 days agopropep6 precursor elicitor peptide6:
 
GRMZM2G440972
Poretsky, E et al. 2020. Plant J pp.doi: 10.1111/tpj.15022     Reference: October 15th, 2020
Gene Product: October 16th, 2020
Gene Model: October 16th, 2020
13 days agorboh2 respiratory burst oxidase2:
3.07
GRMZM2G138152
Kaur, K et al. 2020. J Biosciences 45:132     Reference: October 16th, 2020
Gene Product: July 15th, 2013
Gene Model: July 2nd, 2013
14 days agoapx2 ascorbate peroxidase2: leaf cDNA, similar to plant cytosolic ascorbate peroxidase; sequence distinct from apx1
2.08
GRMZM2G140667
Qu, CX et al. 2020. Genes 11:1204     Reference: October 15th, 2020
Gene Product: September 1st, 2003
Variation: February 16th, 2015
Gene Model: February 16th, 2015
Recommended by Ed Coe:
January 8th, 2008
14 days agodhar1 dehydroascorbate reductase like1:
8.05
GRMZM5G855672
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: March 28th, 2013
Gene Model: April 1st, 2013
14 days agoapx11 ascorbate peroxidase11:
10.02
GRMZM2G014397
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: October 15th, 2020
Gene Model: January 25th, 2018
14 days agoapx1 ascorbate peroxidase homolog:
9.04
GRMZM2G054300
Qu, CX et al. 2020. Genes 11:1204     Reference: October 15th, 2020
Gene Product: October 15th, 2020
Variation: August 10th, 2012
Gene Model: June 19th, 2013
14 days agogsr1 glutathione reductase1: single copy leaf cDNA csu111, similar to pea glutathione reductase
1.01
   Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: September 1st, 2003
Variation: January 30th, 2015
14 days agoprr1 putidaredoxin reductase homolog1: endosperm cDNA 5C04E05 (uaz204), similar to NADH-putidaredoxin reductase
5.06
GRMZM2G320307
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: September 1st, 2003
Variation: December 18th, 2014
Gene Model: December 18th, 2014
14 days agodar1 monodehydroascorbate reductase homolog1: leaf cDNA csu196 sequence similar to cucumber monodehydroascorbate reductase (NADH)
2.06
GRMZM2G084881
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: September 1st, 2003
Variation: November 17th, 2012
Gene Model: July 27th, 2016
14 days agoapx3 ascorbate peroxidase homolog3:
 
GRMZM2G137839
Qu, CX et al. 2020. Genes 11:1204     Reference: October 15th, 2020
Gene Product: October 15th, 2020
Variation: August 11th, 2012
Gene Model: June 19th, 2013
14 days agodhar2 dehydroascorbate reductase like2:
 
GRMZM2G005710
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: March 28th, 2013
Gene Model: August 14th, 2017
14 days agoapx4 ascorbate peroxidase4:
 
GRMZM2G316256
Xu, JH et al. 2017. Plant Physiol Biochem 117:51-60     Reference: June 5th, 2017
Gene Product: October 15th, 2020
Variation: June 5th, 2017
Gene Model: June 5th, 2017
14 days agoapx6 ascorbate peroxidase6:
 
GRMZM2G004211
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: October 15th, 2020
Gene Model: October 15th, 2020
14 days agoapx7 ascorbate peroxidase7:
 
GRMZM2G047968
    Gene Product: October 15th, 2020
Gene Model: October 15th, 2020
14 days agoapx8 ascorbate peroxidase8:
 
       Gene Product: October 15th, 2020
14 days agoapx9 ascorbate peroxidase9:
 
GRMZM2G460406
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: October 15th, 2020
Gene Model: October 15th, 2020
14 days agoapx10 ascorbate peroxidase10:
 
GRMZM2G120517
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: October 15th, 2020
Gene Model: October 15th, 2020
14 days agopepr1 plant elicitor peptide receptor1:
 
GRMZM2G011806
Poretsky, E et al. 2020. Plant J pp.doi: 10.1111/tpj.15022     Reference: October 15th, 2020
Gene Product: July 10th, 2019
Gene Model: October 15th, 2020
14 days agopepr2 plant elicitor peptide receptor2:
 
GRMZM2G428554
Poretsky, E et al. 2020. Plant J pp.doi: 10.1111/tpj.15022     Reference: October 15th, 2020
Gene Product: July 10th, 2019
Gene Model: October 15th, 2020
14 days agoapx12 ascorbate peroxidase12: NCBI: similar to Arabdopsis L-ascorbate peroxidase
5.05
   Qu, CX et al. 2020. Genes 11:1204     Reference: October 15th, 2020
Gene Product: October 15th, 2020
Variation: March 21st, 2017
14 days agodar2 monodehydroascorbate reductase2:
4.05
GRMZM2G134708
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: October 15th, 2020
Gene Model: April 16th, 2020
14 days agogsr2 glutathione reductase2:
5.08
GRMZM5G806449
Sytykiewicz, H. 2016. Int J Mol Sci 17:268     Reference: October 15th, 2020
Gene Product: September 1st, 2003
Gene Model: May 25th, 2020
14 days agocl29906_1  :
1.04
GRMZM2G057412
    Variation: September 25th, 2007
Gene Model: October 15th, 2020
15 days agots6 tasselseed6: Recessive alleles have more than two florets per spikelet, and reversed germ orientation. Dominant Ts6 tassels are compact, pistillate to mixed and ears have irregular kernel placement.
1.11
GRMZM5G862109
Yang, L et al. 2020. Euphytica 216:172     Reference: October 14th, 2020
Gene Product: July 5th, 2019
Variation: December 4th, 2013
Gene Model: July 14th, 2011
Recommended by George Chuck:
September 25th, 2007
15 days agoubi1 ubiquitin1: genomic sequence, 7 contiguous direct ubiquitin repeats; transcript specific probe; promoter active in monocots, not in tobacco
 
GRMZM2G409726
Wang, PH et al. 2020. Frontiers Plant Sci 11:570778     Reference: October 14th, 2020
Gene Product: September 1st, 2003
Variation: November 20th, 2014
Gene Model: November 18th, 2014
15 days agopin4 PIN-formed protein4: auxin efflux carriter similar to Arabidopsis PIN1 (Forestan et al 2012), but from PIN clade not found in all flowering plants save for the Brassicacease (O'Connor 2014 et al
4.08
GRMZM2G171702
Yang, L et al. 2020. Euphytica 216:172     Reference: October 14th, 2020
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
16 days agogrf9 growth-regulating factor9: NCBI: growth-regulating factor 9-like
5.08 - 5.08
GRMZM5G893117
Kong, JX et al. 2020. Frontiers Plant Sci 11:572319     Reference: October 13th, 2020
Variation: March 30th, 2017
Gene Model: March 30th, 2017
19 days agoomt2 Caffeoyl CoA O-methyltransferase2:
9.02
GRMZM2G099363
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Gene Product: January 5th, 2014
Variation: May 13th, 2016
Gene Model: September 17th, 2014
19 days agoAY110631  :
4.08
GRMZM2G439311
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Variation: July 29th, 2004
Gene Model: April 17th, 2018
19 days agohct1 hydroxycinnamoyltransferase1: up-regulated in the Rp1-D21 mutant lines; colocalized with the SNP associated with Rp1-D21-induced HR
 
GRMZM2G061806
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Gene Product: November 7th, 2015
Gene Model: November 7th, 2015
19 days agocybc7 cytochrome b-c1 complex subunit 7: encodes an important part of the mitochondrial electron transport chain that can suppress HR mediated by Rp1-D21 in a transient expression assay
 
GRMZM2G318346
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Gene Product: January 30th, 2019
Variation: January 30th, 2019
Gene Model: January 30th, 2019
19 days agopgh1 polygalacturonase gene homolog1: functions as a suppressor of programmed cell death induced by at least two autoactive NLR proteins and by two chemical inducers
 
GRMZM2G135763
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Gene Product: September 1st, 2003
Variation: July 15th, 2019
Gene Model: July 15th, 2019
19 days agohsp13 heat shock protein13:
 
GRMZM2G012631
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Gene Product: January 14th, 2019
Gene Model: October 10th, 2020
19 days agopk5 protein kinase5:
 
GRMZM2G144042
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Gene Product: January 14th, 2019
Gene Model: October 10th, 2020
19 days agoGRMZM2G351387  :
 
GRMZM2G351387
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Gene Product: January 14th, 2019
Gene Model: October 10th, 2020
19 days agoIDP343  : similar to vacuolar protein-sorting-associated protein 37-1 of A. thaliana
1.02
GRMZM2G023575
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Variation: March 31st, 2005
Gene Model: February 11th, 2019
19 days agosrph1 SGT1 disease resistance protein homolog1: interacts with RACK1 protein involved in disease resistance (Wang et al 2014)
3.09
GRMZM2G105019
Murphree, C et al. 2020. Mol Plant Pathol pp.doi: 10.1111/mpp.12999     Reference: October 10th, 2020
Variation: March 31st, 2005
Gene Model: March 23rd, 2015
19 days agopk3 S-domain class receptor-like kinase3:
7.03
GRMZM2G309025
Zhang, R et al. 1999. Plant Physiol 121: 685-686     Reference: October 24th, 2006
Gene Product: October 10th, 2020
Variation: May 12th, 2005
Gene Model: August 5th, 2015
20 days agoskus9 skewed root growth similar9: Similar to Monocopper oxidase-like protein SKU5 of Arabidopsis C-terminal peptide-binding protein 1
1.07
GRMZM2G438386
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Variation: September 28th, 2016
Gene Model: September 28th, 2016
20 days agolac2 laccase2:
6.05
GRMZM2G146152
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: August 28th, 2018
20 days agolac10 laccase10:
 
GRMZM2G140527
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: May 6th, 2016
20 days agolac9 laccase9:
 
GRMZM2G132169
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: September 28th, 2016
20 days agolac3 laccase3:
 
GRMZM2G169033
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
20 days agolac5 laccase5:
 
GRMZM2G367668
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
20 days agolac4 laccase4:
 
GRMZM2G072780
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
20 days agolac1 laccase1:
 
GRMZM2G400390
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 31st, 2018
20 days agolac11 laccase11:
 
GRMZM2G305526
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac12 laccase12:
 
GRMZM5G814718
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac13 laccase13:
 
GRMZM2G166857
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac14 laccase14:
 
AC234190.1_FG002
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac15 laccase15:
 
GRMZM2G072808
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac16 laccase16:
 
GRMZM5G870184
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac17 laccase17:
 
GRMZM2G309594
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac18 laccase18:
 
GRMZM2G388587
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac19 laccase19:
 
GRMZM2G320786
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac20 laccase20:
 
GRMZM5G800488
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac21 laccase21:
 
GRMZM2G447271
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac22 laccase22:
 
GRMZM2G336337
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac23 laccase23:
 
GRMZM2G094375
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 3rd, 2020
20 days agolac7 laccase7:
 
GRMZM2G400390
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: March 31st, 2018
Gene Model: March 16th, 2020
20 days agoskus2 skewed root growth similar2: closest paralog to skus1 (92.31% similar)
 
GRMZM2G068682
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus3 skewed root growth similar3: 74.77% similar to skus1
 
GRMZM2G129064
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus4 skewed root growth similar4: 73.10% similar to skus1
 
GRMZM2G142584
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus6 skewed root growth similar6: 52.76% similar to skus1
 
GRMZM2G076225
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus7 skewed root growth similar7: 52.35% similar to skus1
 
GRMZM2G416509
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus8 skewed root growth similar8: 47.29% similar to skus1
 
GRMZM2G360529
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus10 skewed root growth similar10: 46.77% similar to skus1
 
GRMZM2G077317
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus11 skewed root growth similar11: 46.20% similar to skus1
 
GRMZM2G402584
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus12 skewed root growth similar12: 46.14% similar to skus1
 
GRMZM2G049693
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus13 skewed root growth similar13: 46.00% similar to skus1
 
GRMZM2G043301
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus14 skewed root growth similar14: 45.64% similar to skus1
 
GRMZM2G172642
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus15 skewed root growth similar15: 29.87% similar to skus1
 
GRMZM2G064106
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus16 skewed root growth similar16: 28.72% similar to skus1
 
GRMZM2G386170
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus17 skewed root growth similar17: 28.26% similar to skus1
 
GRMZM2G163535
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus18 skewed root growth similar18: 26.63% similar to skus1
 
GRMZM2G141376
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: October 9th, 2020
20 days agoskus1 skewed root growth similar1: mutant produced small, shriveled kernels with an aberrant basal endosperm transfer layer (BETL) and placento‐chalazal (PC) layer and irregular starch granules
3.06
GRMZM2G157929
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: May 29th, 2019
Variation: October 9th, 2020
Gene Model: September 28th, 2020
20 days agoskus5 skewed root growth similar5: 52.77% similar to skus1
5.04
GRMZM2G076985
Zhang, K et al. 2020. New Phytol pp.doi: 10.1111/nph.16988     Reference: October 9th, 2020
Gene Product: October 9th, 2020
Gene Model: May 9th, 2020
21 days agomsl2 mechanosensitive channel of small conductance-like2: Class I MSL; found to be localized either in mitochondrial membrane or plastid envelop and show sequence similarity with MscS channels of bacteria
2.02
   Kaur, A et al. 2020. Sci. Rep. 10:227     Reference: October 8th, 2020
Gene Product: October 8th, 2020
Variation: November 16th, 2017
21 days agoemb5 embryo specific5: (was emb*-8518) embryo development blocked at transition to early coleoptilar stage
2.08 - 2.09
   Li, Y et al. 2020. Plant Mol Biol Rep pp.doi: 10.1007/s11105-020-01251-w     Reference: October 8th, 2020
Variation: September 1st, 2003
21 days agomsl1 mechanosensitive channel of small conductance-like1: Class I MSL; found to be localized either in mitochondrial membrane or plastid envelop and show sequence similarity with MscS channels of bacteria
 
GRMZM2G028914
Kaur, A et al. 2020. Sci. Rep. 10:227     Reference: October 8th, 2020
Gene Product: October 8th, 2020
Gene Model: October 8th, 2020
21 days agomsl3 mechanosensitive channel of small conductance-like3: Class II MSL; predicted to be present in the plasma membrane
 
GRMZM2G027891
Kaur, A et al. 2020. Sci. Rep. 10:227     Reference: October 8th, 2020
Gene Product: October 8th, 2020
Gene Model: October 8th, 2020
21 days agomsl4 mechanosensitive channel of small conductance-like4: Class II MSL; predicted to be present in the plasma membrane
 
GRMZM2G303244
Kaur, A et al. 2020. Sci. Rep. 10:227     Reference: October 8th, 2020
Gene Product: October 8th, 2020
Gene Model: October 8th, 2020
21 days agomsl5 mechanosensitive channel of small conductance-like5: Class II MSL; predicted to be present in the plasma membrane
 
GRMZM2G005996
Kaur, A et al. 2020. Sci. Rep. 10:227     Reference: October 8th, 2020
Gene Product: October 8th, 2020
Gene Model: October 8th, 2020
21 days agomsl6 mechanosensitive channel of small conductance-like6: Class II MSL; predicted to be present in the plasma membrane
 
AY530952.1_FG001
Kaur, A et al. 2020. Sci. Rep. 10:227     Reference: October 8th, 2020
Gene Product: October 8th, 2020
Gene Model: October 8th, 2020
21 days agomsl7 mechanosensitive channel of small conductance-like7: Class II MSL; predicted to be present in the plasma membrane
 
GRMZM2G005013
Kaur, A et al. 2020. Sci. Rep. 10:227     Reference: October 8th, 2020
Gene Product: October 8th, 2020
Gene Model: October 8th, 2020
21 days agomsl8 mechanosensitive channel of small conductance-like8: Class II MSL; predicted to be present in the plasma membrane
 
GRMZM2G090627
Kaur, A et al. 2020. Sci. Rep. 10:227     Reference: October 8th, 2020
Gene Product: October 8th, 2020
Gene Model: October 8th, 2020
22 days agoals2 acetolactate synthase2: sensitive to imidazolinone herbicides; acetohydroxyacid synthase has altered herbicide inhibition kineticsSecond band mapped to this site. Acetolactate pyruvate-lyase from tobacco used as the dup(als2) probe
5.04
GRMZM2G143008
Jiang, Y-Y et al. 2020. Genome Biol 21:257     Reference: October 7th, 2020
Gene Product: September 1st, 2003
Variation: October 7th, 2020
Gene Model: July 27th, 2016
22 days agoals1 acetolactate synthase1: sensitive to imidazolinone herbicides; acetohydroxyacid synthase has altered herbicide inhibition kinetics
4.05
   Jiang, Y-Y et al. 2020. Genome Biol 21:257     Reference: October 7th, 2020
Gene Product: September 1st, 2003
Variation: October 7th, 2020
23 days agolox3 lipoxygenase3:
3.06
   Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: January 3rd, 2018
Variation: November 14th, 2014
23 days agornrs3 ribonucleotide reductase small subunit3: similar to Ribonucleoside-diphosphate reductase small chain C of A. thaliana
2.04
GRMZM2G323679
Xie, SY et al. 2020. Plant Physiol pp.doi: 10.1104/pp.20.00219     Reference: October 6th, 2020
Gene Product: October 6th, 2020
Gene Model: February 19th, 2019
23 days agopebp15 phosphatidylethanolamine-binding protein15:
 
   Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Variation: December 15th, 2010
23 days agoglb1 globulin1: was prot1; electrophoretic mobility, null allele is known; embryo protein; SSRs phi011, 055, 094
1.09
   Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: September 1st, 2003
Variation: January 29th, 2015
23 days agosh1 shrunken1: inflated endosperm collapses on drying, forming smoothly indented kernels; sucrose synthase-sh1 of endosperm (compare sus1 and sus2); homotetramer; SSRs phi028, 044, 033
9.01
   Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: October 25th, 2006
Variation: June 9th, 2020
23 days agosalt1 SalT homolog1: gene transcript associated with vascular cells localized around phloem cells; function unknown;
10.02
GRMZM2G142891
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: September 1st, 2003
Variation: January 9th, 2018
Gene Model: December 12th, 2017
23 days agoumc1346  :
4.05
GRMZM2G366392
Jagtap, AB et al. 2020. Int J Mol Sci pp.DOI: 10.3390/ijms21197386     Reference: October 6th, 2020
Variation: September 1st, 2003
Gene Model: June 7th, 2018
23 days agoumc1742  :
3.04
GRMZM2G114552
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Variation: September 1st, 2003
Gene Model: April 2nd, 2018
23 days agopho1 starch phosphorylase1: amyloplast starch phosphorylase
1.10
GRMZM2G074158
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: March 26th, 2015
Gene Model: March 26th, 2015
23 days agonip2c NOD26-like membrane intrinsic protein2:
9.01
GRMZM2G081239
Jagtap, AB et al. 2020. Int J Mol Sci pp.DOI: 10.3390/ijms21197386     Reference: October 6th, 2020
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: June 3rd, 2015
23 days agohsp18a 18 kda heat shock protein18a: induced by heat shock specifically in anthers or spikelets containing meitotic microsporocytes
9.04 - 9.05
GRMZM5G899188
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: September 1st, 2003
Variation: June 27th, 2014
Gene Model: June 27th, 2014
23 days agofht2 flavanone 3-hydroxylase2:
1.04
GRMZM2G382569
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: June 8th, 2012
Gene Model: June 7th, 2017
23 days agobrs1 brassinosteroid synthesis1:
1.03
GRMZM2G065635
Jagtap, AB et al. 2020. Int J Mol Sci pp.DOI: 10.3390/ijms21197386   AT3G50660 (TAIR) Reference: October 6th, 2020
Gene Product: September 20th, 2010
Variation: November 7th, 2013
Gene Model: October 3rd, 2012
23 days agoipt2 isopentenyl transferase2: encodes an isopentenyl transferase
 
GRMZM2G084462
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: March 19th, 2014
Variation: July 11th, 2013
Gene Model: July 10th, 2013
23 days agorca3 RUBISCO activase3: encodes alpha form of RUBISCO activase
 
GRMZM2G162200
Jagtap, AB et al. 2020. Int J Mol Sci pp.DOI: 10.3390/ijms21197386     Reference: October 6th, 2020
Gene Product: October 28th, 2014
Gene Model: February 11th, 2014
23 days agoubi3 ubiquitin3: candidate gene for major plant and ear height QTL
 
GRMZM2G014119
Chen, SY et al. 2020. BMC Genomics 21:689   AT1G31340 (TAIR) Reference: October 6th, 2020
Gene Product: September 1st, 2003
Gene Model: December 28th, 2016
23 days agompkl1 MAP kinase-like1: encodes a functional kinase that mediates the response of maize seedlings to drought by regulating ABA homeostasis
 
GRMZM2G108829
Jagtap, AB et al. 2020. Int J Mol Sci pp.DOI: 10.3390/ijms21197386     Reference: October 6th, 2020
Gene Product: May 13th, 2014
Variation: December 21st, 2019
Gene Model: December 21st, 2019
23 days agornrs1 ribonucleotide reductase small subunit1:
 
GRMZM2G060163
Xie, SY et al. 2020. Plant Physiol pp.doi: 10.1104/pp.20.00219     Reference: October 6th, 2020
Gene Product: October 6th, 2020
Gene Model: October 6th, 2020
23 days agornrl2 ribonucleotide reductase large subunit2:
 
GRMZM2G340527
Xie, SY et al. 2020. Plant Physiol pp.doi: 10.1104/pp.20.00219     Reference: October 6th, 2020
Gene Product: October 6th, 2020
Gene Model: October 6th, 2020
23 days agornrs2 ribonucleotide reductase small subunit2:
 
GRMZM2G155546
Xie, SY et al. 2020. Plant Physiol pp.doi: 10.1104/pp.20.00219     Reference: October 6th, 2020
Gene Product: October 6th, 2020
Gene Model: October 6th, 2020
23 days agornrl1 ribonucleotide reductase large subunit1: mutant has a thermosensitive vanishing tassel phenotype
 
GRMZM2G304362
Xie, SY et al. 2020. Plant Physiol pp.doi: 10.1104/pp.20.00219     Reference: October 6th, 2020
Gene Product: October 6th, 2020
Variation: October 6th, 2020
Gene Model: October 6th, 2020
23 days agoIDP49  :
3.05
GRMZM2G136262
Jagtap, AB et al. 2020. Int J Mol Sci pp.DOI: 10.3390/ijms21197386     Reference: October 6th, 2020
Variation: March 31st, 2005
Gene Model: February 24th, 2019
23 days agobetl9 basal endosperm transfer layer9: endosperm transfer cell specific protein regulated by mrp1 myb related protein1; RFLP gpm92
3.05
GRMZM2G087413
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: September 1st, 2003
Variation: October 8th, 2009
Gene Model: July 4th, 2014
23 days agocol15 C2C2-CO-like-transcription factor 1:
1.04
GRMZM2G134671
Jagtap, AB et al. 2020. Int J Mol Sci pp.DOI: 10.3390/ijms21197386     Reference: October 6th, 2020
Gene Product: June 18th, 2018
Gene Model: June 16th, 2018
23 days agopsei8 cystatin8:
1.04
GRMZM2G401374
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: April 21st, 2008
Variation: April 21st, 2008
Gene Model: July 28th, 2016
23 days agofps1 farnesyl pyrophosphate synthase1: endosperm cDNA sequence; two copies detected; up-regulated in endosperm mutants, o2 and fl2 (Li et al. 1996).
8.03
GRMZM2G168681
Yang, YT et al. 2020. Biotect Biotech Equip 34:.doi: 10.1080/13102818.2020.1827981     Reference: October 6th, 2020
Gene Product: August 18th, 2015
Variation: May 9th, 2009
Gene Model: April 8th, 2013
24 days agoptf1 Pi starvation-induced transcription factor1: single copy, may be involved in regulating carbohydrate metabolism
9.01 - 9.02
GRMZM2G024530
Wang, QJ et al. 2019. Plant Genome 12:190039   LOC_Os02g35660 (MSU/TIGR)
Os02g0564700 (Gramene)
Reference: October 5th, 2020
Gene Product: September 14th, 2016
Variation: April 23rd, 2011
Gene Model: April 19th, 2011
Recommended by Maria Katherine Mejia-Guerra:
April 18th, 2011
24 days agoms6021 male sterile6021: mutants are male sterile; encodes a fatty-acyl-CoA reductase
9.04 - 9.06
GRMZM2G120987
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: December 1st, 2017
Variation: December 1st, 2017
Gene Model: December 1st, 2017
24 days agoms26 male sterile26: tapetal cells abnormal, die early; microspores vacuolate early and abort after the tetrad stage
1.02 - 1.02
   Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: September 30th, 2013
Variation: July 8th, 2020
24 days agoms10 male sterile10: like ms5; affected at microspore vacuolationsimilar to Arabidopsis cytochrome P450, family 703, subfamily A, polypeptide 2
10.04 - 10.05
GRMZM5G830329
Zhang, HS et al. 2020. Plant Genome 13:e20022   AT1G01280 (TAIR)
LOC_Os08g03682 (MSU/TIGR)
Reference: October 5th, 2020
Gene Product: January 20th, 2017
Variation: January 19th, 2017
Gene Model: January 19th, 2017
24 days agorf2 restorer of fertility2: see rf1; cDNA prf2a complements E. coli mutant deficient in aldehyde dehydrogenase; mitochondrial
9.03
   Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: September 1st, 2003
Variation: December 18th, 2006
24 days agorps27c ribosomal protein S27c:
5.01
GRMZM2G132121
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Variation: March 14th, 2015
Gene Model: March 14th, 2015
24 days agoumc1367  :
10.03
GRMZM2G037378
Wang, QJ et al. 2019. Plant Genome 12:190039     Reference: October 5th, 2020
Variation: September 1st, 2003
Gene Model: December 13th, 2017
24 days agoumc1509  : NCBI: similar to Arabidopsis PATATIN-like protein 5
4.02
GRMZM2G154523
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Variation: May 16th, 2017
Gene Model: May 16th, 2017
24 days agoumc1597  :
5.03
GRMZM2G124791
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Variation: September 1st, 2003
Gene Model: June 19th, 2018
24 days agorh4 RNA helicase4: Chloroplast Dead box family RNA helicase. Promotes chloroplast group II intron splicing and assembly of the 50S ribosomal subunit. Associates in vivo with pre-50S ribosomal subunits and with a subset of group II introns. (A. Barkan, 2015)cp Dead box RNA helicase involved in cp intron splicing and assembly of the 50S ribosomal subunit
 
AC198418.3_FG005
Zhang, HS et al. 2020. Plant Genome 13:e20022   At5g26742 (TAIR)
LOC_Os03g61220 (MSU/TIGR)
Os03g0827700 (Gramene)
Reference: October 5th, 2020
Gene Product: May 17th, 2012
Variation: December 30th, 2015
Gene Model: May 17th, 2012
24 days agoglct1 glucose translocator1:
8.02
GRMZM2G153704
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: September 1st, 2003
Variation: May 30th, 2014
Gene Model: August 23rd, 2014
24 days agopdi1 protein disulfide isomerase1: single copy cDNA, SSR umc1550
4.03
GRMZM2G091481
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: September 1st, 2003
Variation: December 23rd, 2015
Gene Model: October 23rd, 2013
24 days agocmu1 chorismate mutase1: function largely predicted; protein heterodimerizes with fungal chorismate mutase
8.08
GRMZM2G116087
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: February 12th, 2014
Gene Model: February 12th, 2014
24 days agopdi6 protein disulfide isomerase6:
3.04
GRMZM2G128171
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: September 1st, 2003
Variation: December 30th, 2015
Gene Model: December 18th, 2015
24 days agopdi7 protein disulfide isomerase7:
6.05
GRMZM2G159369
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: September 1st, 2003
Variation: January 7th, 2016
Gene Model: December 18th, 2015
24 days agoalt7 alanine aminotransferase7: bundle sheath alanine transasminase; see also alt8, alt9
7.00
GRMZM2G120563
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: October 2nd, 2020
Gene Model: September 4th, 2018
24 days agoaox2 alternative oxidase2: primers give PCR product closely similar to alternative oxidase in other species
 
GRMZM2G125669
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: February 22nd, 2012
Variation: March 1st, 2012
Gene Model: February 17th, 2012
24 days agophos2 phosphate transporter2:
 
GRMZM2G466545
Wang, QJ et al. 2019. Plant Genome 12:190039   AT3G23430 (TAIR) Reference: October 5th, 2020
Gene Product: February 27th, 2016
Variation: February 27th, 2016
Gene Model: February 27th, 2016
24 days agohak22 potassium high-affinity transporter22:
 
GRMZM2G409771
Wang, QJ et al. 2019. Plant Genome 12:190039     Reference: October 5th, 2020
Gene Product: March 12th, 2020
Gene Model: March 12th, 2020
24 days agotk1 transketolase 1:
9.03
GRMZM2G033208
Zhang, HS et al. 2020. Plant Genome 13:e20022     Reference: October 5th, 2020
Gene Product: March 11th, 2008
Variation: January 29th, 2011
Gene Model: December 21st, 2015
26 days agoakin2 AKINbetagamma-1 protein kinase2:
1.03
   Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: December 31st, 2018
Variation: September 25th, 2007
26 days agotrps2 trehalose-6-phosphate synthase2:
1.03
GRMZM2G099860
Zhou, ML et al. 2014. J Plant Growth Reg 33:256-271     Reference: June 26th, 2014
Gene Product: October 3rd, 2020
Gene Model: February 11th, 2019
26 days agora3 ramosa3: branched inflorescence; mutant ears have abnormal long branches at their bases; trehalose biosynthesis
7.06
   Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: October 3rd, 2020
Variation: December 3rd, 2010
26 days agovp5 viviparous5: like vp2cDNA, strongest hybridization to this site; other sites are near o2, bnl17.25 and dup103; encodes a 2-step phytoene desaturase; SSR umc1070
1.02 - 1.02
   Gentzel, IN et al. 2020. Plant Methods 16:133     Reference: October 3rd, 2020
Gene Product: December 13th, 2011
Variation: March 4th, 2014
26 days agohb71 Homeobox-transcription factor 71: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Fang, P et al. 2020. Plant Mol Biol Rep pp.doi: 10.1007/s11105-020-01252-9     Reference: October 3rd, 2020
Gene Product: October 3rd, 2020
26 days agotrpp4 trehalose-6-phosphate phosphatase4: double mutants with ra3 give a more extreme phenotype
4.08
GRMZM2G151044
Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: October 3rd, 2020
Variation: April 2nd, 2019
Gene Model: June 7th, 2018
26 days agohb91 Homeobox-transcription factor 91: Tests with B-A translocations indicated that this probe did not map to chromosomes 4L or 6L.NCBI: Homeodomain leucine zipper family IV proteinLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
10.07
GRMZM2G122897
Yilmaz, A et al. 2009. Plant Physiol 149:171-180     Reference: May 12th, 2011
Gene Product: October 3rd, 2020
Variation: April 25th, 2017
Gene Model: April 25th, 2017
26 days agotrpp11 trehalose-6-phosphate phosphatase11:
9.01
GRMZM2G080354
Figueroa, D; Bass, HW. 2012. Cell Chromosome Res. 20:363-80     Reference: July 18th, 2014
Gene Product: October 3rd, 2020
Variation: September 1st, 2003
Gene Model: March 2nd, 2018
26 days agotrps1 trehalose-6-phosphate synthase1:
 
GRMZM2G068943
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: May 28th, 2012
26 days agotre1 trehalase1:
 
GRMZM2G162690
Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: September 15th, 2013
Gene Model: September 15th, 2013
26 days agotrpp1 trehalose-6-phosphate phosphatase1: similar to haloacid dehalogenase-like hydrolase domain-containing protein of A. thaliana
 
GRMZM2G347280
Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrpp2 trehalose-6-phosphate phosphatase2:
 
GRMZM2G140078
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrpp3 trehalose-6-phosphate phosphatase3:
 
GRMZM2G117564
Zhou, ML et al. 2014. J Plant Growth Reg 33:256-271     Reference: June 26th, 2014
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrpp5 trehalose-6-phosphate phosphatase5:
 
GRMZM2G059840
Zhou, ML et al. 2014. J Plant Growth Reg 33:256-271     Reference: June 26th, 2014
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrpp7 trehalose-6-phosphate phosphatase7:
 
GRMZM2G055150
Oszvald, M et al. 2018. Plant Physiol pp.DOI: 10.1104/pp.17.01673     Reference: February 7th, 2018
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrpp8 trehalose-6-phosphate phosphatase8:
 
GRMZM2G174396
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrpp9 trehalose-6-phosphate phosphatase9:
 
GRMZM5G840145
Zhou, ML et al. 2014. J Plant Growth Reg 33:256-271     Reference: June 26th, 2014
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrpp12 trehalose-6-phosphate phosphatase12:
 
GRMZM2G178546
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps3 trehalose-6-phosphate synthase3:
 
GRMZM2G079928
Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps4 trehalose-6-phosphate synthase4:
 
GRMZM2G008226
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps5 trehalose-6-phosphate synthase5:
 
GRMZM2G527891
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps6 trehalose-6-phosphate synthase6:
 
GRMZM2G304274
Acosta-Perez, P et al. 2020. Plants 9:315     Reference: March 3rd, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps7 trehalose-6-phosphate synthase7:
 
GRMZM2G123277
Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps8 trehalose-6-phosphate synthase8: similar to alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 of A. thaliana
 
GRMZM2G007736
Zhou, ML et al. 2014. J Plant Growth Reg 33:256-271     Reference: June 26th, 2014
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps9 trehalose-6-phosphate synthase9:
 
GRMZM2G366659
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps10 trehalose-6-phosphate synthase10:
 
GRMZM2G312521
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps11 trehalose-6-phosphate synthase11:
 
GRMZM2G122231
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps12 trehalose-6-phosphate synthase12: similar to alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 of A. thaliana
 
GRMZM2G133966
Zhou, ML et al. 2014. J Plant Growth Reg 33:256-271     Reference: June 26th, 2014
Gene Product: October 3rd, 2020
Gene Model: March 19th, 2019
26 days agotrps13 trehalose-6-phosphate synthase13:
 
GRMZM2G019183
Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps14 trehalose-6-phosphate synthase14:
 
GRMZM2G416836
Zhou, ML et al. 2014. J Plant Growth Reg 33:256-271     Reference: June 26th, 2014
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agotrps15 trehalose-6-phosphate synthase15:
 
GRMZM2G118462
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: September 15th, 2013
26 days agosnrk1a2 SNF1-related kinase alpha1-like2:
 
GRMZM2G180704
Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: December 31st, 2018
Gene Model: February 13th, 2014
26 days agotrpp13 trehalose-6-phosphate phosphatase13:
 
GRMZM5G890599
Claeys, H, et al. 2019. Nature Plants. 0:doi: 10.1038/s41477-019-0394-z     Reference: June 1st, 2019
Gene Product: October 3rd, 2020
Gene Model: April 2nd, 2019
26 days agotrpp14 trehalose-6-phosphate phosphatase14:
 
   Claeys, H, et al. 2019. Nature Plants. 0:doi: 10.1038/s41477-019-0394-z     Reference: June 1st, 2019
Gene Product: October 3rd, 2020
26 days agotrpp6 trehalose-6-phosphate phosphatase6: similar to Arabidopsis haloacid dehalogenase-like hydrolase domain-containing protein
5.06
GRMZM2G112830
Liang, X-G et al. 2020. J Plant Physiol pp.doi: 10.1016/j.jplph.2020.153194     Reference: May 26th, 2020
Gene Product: October 3rd, 2020
Gene Model: February 7th, 2018
26 days agosnrk1a1 SNF1-related kinase alpha1-like1:
6.06
GRMZM2G077278
Paul, MJ et al. 2020. Biochem Soc Trans pp.doi: 10.1042/BST20200286     Reference: October 3rd, 2020
Gene Product: December 31st, 2018
Gene Model: February 7th, 2018
27 days agoarftf9 ARF-transcription factor 9: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.04
   Saidi, A; Hajibarat, Z. 2020. Notulae Scientia Biologicae 12:646-657     Reference: October 2nd, 2020
Variation: September 25th, 2007
27 days agoarftf25 ARF-transcription factor 25: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
8.06
GRMZM2G116557
Saidi, A; Hajibarat, Z. 2020. Notulae Scientia Biologicae 12:646-657     Reference: October 2nd, 2020
Variation: August 22nd, 2017
Gene Model: August 22nd, 2017
27 days agoarftf18 ARF-transcription factor 18: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
5.03
GRMZM2G035405
Saidi, A; Hajibarat, Z. 2020. Notulae Scientia Biologicae 12:646-657     Reference: October 2nd, 2020
Variation: September 1st, 2003
Gene Model: June 23rd, 2018
27 days agoalt1 L-alanine:2-oxoglutarate aminotransferase1: electrophoretic mobility; alt1 and alt2 interact to form heterodimers
 
   Watson, NR et al. 1992. Biochem Genet 30:371-383     Reference: September 1st, 2003
Gene Product: October 2nd, 2020
27 days agoalt2 L-alanine:2-oxoglutarate aminotransferase2: electrophoretic mobility; alt1 and alt2 interact to form heterodimers
 
   Watson, NR et al. 1992. Biochem Genet 30:371-383     Reference: September 1st, 2003
Gene Product: October 2nd, 2020
27 days agoalt3 L-alanine:2-oxoglutarate aminotransferase3: electrophoretic mobility
 
   Watson, NR et al. 1992. Biochem Genet 30:371-383     Reference: September 1st, 2003
Gene Product: October 2nd, 2020
27 days agoarftf11 ARF-transcription factor 11: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Saidi, A; Hajibarat, Z. 2020. Notulae Scientia Biologicae 12:646-657     Reference: October 2nd, 2020
Variation: July 7th, 2017
27 days agoarftf16 ARF-transcription factor 16: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Saidi, A; Hajibarat, Z. 2020. Notulae Scientia Biologicae 12:646-657     Reference: October 2nd, 2020
Variation: January 10th, 2020
27 days agoarftf23 ARF-transcription factor 23: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Saidi, A; Hajibarat, Z. 2020. Notulae Scientia Biologicae 12:646-657     Reference: October 2nd, 2020
Variation: July 7th, 2017
27 days agoarftf26 ARF-transcription factor 26: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Saidi, A; Hajibarat, Z. 2020. Notulae Scientia Biologicae 12:646-657     Reference: October 2nd, 2020
Variation: July 7th, 2017
27 days agoarftf31 ARF-transcription factor 31: plays a key role in low P responses and root architecture regulationLocus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Saidi, A; Hajibarat, Z. 2020. Notulae Scientia Biologicae 12:646-657     Reference: October 2nd, 2020
Variation: August 7th, 2016
27 days agoalt4 L-alanine:2-oxoglutarate aminotransferase4: the relationship between alt4 and previously reported genes alt1, alt2 or alt3 is not clear as sequences for the latter were not published;
5.03
GRMZM2G088064
Tausta, SL et al. 2014. J Exp Bot 65:3543-3555     Reference: November 20th, 2014
Gene Product: October 2nd, 2020
Variation: February 26th, 2010
Gene Model: July 23rd, 2014
27 days agoalt5 alanine aminotransferase5: putative alanine aminotransferase; found in embryo (Davidson 2011), not reported in seedling leaf (Tausta et al 2014)
7.02
GRMZM2G117230
Tausta, SL et al. 2014. J Exp Bot 65:3543-3555     Reference: November 20th, 2014
Gene Product: October 2nd, 2020
Gene Model: July 16th, 2020
27 days agoalt8 alanine amino transferase8: bundle sheath alanine transaminase; see also alt7 and alt9
 
GRMZM5G840582
Tausta, SL et al. 2014. J Exp Bot 65:3543-3555     Reference: November 20th, 2014
Gene Product: October 2nd, 2020
Gene Model: July 23rd, 2014
27 days agoalt10 alanine aminotransferase10: putative alanine aminotransferase weakly expressed in seedling leaf (Tausta et al 2014)
 
GRMZM2G124963
Tausta, SL et al. 2014. J Exp Bot 65:3543-3555     Reference: November 20th, 2014
Gene Product: October 2nd, 2020
Variation: February 20th, 2019
Gene Model: August 1st, 2014
27 days agoalt11 alanine aminotransferase11:
 
GRMZM2G088018
    Gene Product: October 2nd, 2020
Gene Model: July 16th, 2020
27 days agoalt12 alanine aminotransferase12: heat responsive gene
 
GRMZM5G828630
Yao, QL; Di, S-Z. 2020. Intl J Agric Biol 23:475-483     Reference: July 22nd, 2020
Gene Product: October 2nd, 2020
Gene Model: July 22nd, 2020
27 days agosi3 silky3: mutants have silky ears and tassels; up regulated in mutant plants
 
AC209624.2_FG001
Luo, HS et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00043     Reference: October 1st, 2020
Gene Product: October 2nd, 2020
Variation: October 2nd, 2020
Gene Model: October 1st, 2020
27 days agoalt9 alanine aminotransferase9: putative leaf alanine transminase
7.04
GRMZM2G053999
Tausta, SL et al. 2014. J Exp Bot 65:3543-3555     Reference: November 20th, 2014
Gene Product: October 2nd, 2020
Variation: January 13th, 2015
Gene Model: July 23rd, 2014
28 days agomyb53 MYB-transcription factor 53: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
3.09
   Han, QH et al. 2020. Plant Breed pp.doi: 10.1111/pbr.12864     Reference: October 1st, 2020
Variation: September 25th, 2007
28 days agogdcp1 glycine decarboxylase1: cDNA sequences, SSR umc1526
10.01
GRMZM2G104310
Li, Z et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00320     Reference: October 1st, 2020
Gene Product: September 1st, 2003
Variation: October 6th, 2015
Gene Model: October 6th, 2015
28 days agobx4 benzoxazinone synthesis4: endoplasmic reticulum P450 monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; NAM SNP PHM1184
4.01
GRMZM2G172491
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: October 24th, 2011
Variation: October 27th, 2011
Gene Model: October 24th, 2011
28 days agorca1 RUBISCO activase1: single copy leaf cDNA csu901 smilar to RUBISCO activaseencodes the beta form of RUBISCO activase
4.00
GRMZM2G162282
Li, Z et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00320     Reference: October 1st, 2020
Gene Product: October 28th, 2014
Variation: September 1st, 2003
Gene Model: February 11th, 2014
28 days agocsu634  : protein phosphatase 2C-like (Alexandrov et al.)
9.05
GRMZM2G006429
Han, QH et al. 2020. Plant Breed pp.doi: 10.1111/pbr.12864     Reference: October 1st, 2020
Variation: April 20th, 2017
Gene Model: April 20th, 2017
28 days agobd1 branched silkless1: ear silkless with indeterminate branches at base; tassel proliferated, bushy
7.05
GRMZM2G307119
Luo, HS et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00043   At5g18560 (TAIR)
LOC_Os01g21820 (MSU/TIGR)
Os07g0669500 (Gramene)
Reference: October 1st, 2020
Gene Product: July 27th, 2009
Variation: August 13th, 2011
Gene Model: July 14th, 2011
28 days agoc1 colored aleurone1: C1 colored; C1-I dominant colorless; c1 colorless, includes c1-p (pigment inducible by light at germination), c1-n (not inducible)
9.01
   Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: June 16th, 2015
Variation: March 27th, 2013
28 days agocat2 catalase2: electrophoretic mobility; null allele is known; cytosolic/glyoxysomal; tetrameric; intra/interlocus hybrid bands occur
1.01
   Li, Z et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00320     Reference: October 1st, 2020
Gene Product: September 1st, 2003
Variation: September 21st, 2012
28 days agogo1 glycolate oxidase1: seedling lethal necrotic unless supplied high CO2; photorespiration.
 
GRMZM2G129246
Li, Z et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00320     Reference: October 1st, 2020
Gene Product: June 26th, 2009
Variation: April 4th, 2011
Gene Model: January 12th, 2016
28 days agopdk2 pyruvate, orthophosphate dikinase2: cytosolic
8.04
GRMZM2G097457
Li, Z et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00320     Reference: October 1st, 2020
Gene Product: July 28th, 2014
Variation: December 19th, 2017
Gene Model: November 21st, 2012
28 days agompk1 MAP kinase1: cDNA sequence; single copy
9.06
GRMZM2G053987
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 12th, 2013
Variation: January 16th, 2013
Gene Model: July 9th, 2013
28 days agompk2 MAP kinase2: functions in brassinosteroid signaling in antioxidant defense (Zhang et al 2010) cDNA sequence; single copy (Berberich et al 1999)
9.02
GRMZM2G020216
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 12th, 2013
Variation: January 18th, 2013
Gene Model: July 9th, 2013
28 days agomyb8 myb transcription factor8: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
GRMZM2G041415
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: February 16th, 2011
Variation: February 16th, 2011
Gene Model: July 28th, 2016
28 days agozmm14 Zea mays MADS14: during spikelet development zmm4 probably works as a selector gene which is involved in distinguishing the upper and lower floret
1.02
GRMZM2G099522
Luo, HS et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00043     Reference: October 1st, 2020
Variation: August 28th, 2013
Gene Model: August 14th, 2017
28 days agotcptf31 TCP-transcription factor 31: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: September 27th, 2019
28 days agosimk1 salt-induced MAP kinase1:
 
GRMZM2G127141
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 12th, 2013
Gene Model: July 12th, 2013
28 days agobx7 benzoxazinone synthesis7: cytosolic O-methyl transferase; synthesis of cyclohydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc2039, INDEL IDP478.
4.03
GRMZM2G441753
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: October 31st, 2011
Variation: October 26th, 2011
Gene Model: October 19th, 2011
28 days agobx3 benzoxazinone synthesis3: endoplasmic reticulum monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1017
4.01
GRMZM2G167549
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: October 19th, 2011
Variation: November 12th, 2013
Gene Model: October 24th, 2011
28 days agobx5 benzoxazinone synthesis5: endoplasmic reticulum monoxygenase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1276.
4.01
GRMZM2G063756
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: October 24th, 2011
Variation: October 27th, 2011
Gene Model: October 24th, 2011
28 days agobx2 benzoxazinone synthesis2: endoplasmic reticulum P450 monoxygenase; synthesis cyclic hyroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1164, umc1682
4.01
GRMZM2G085661
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: April 8th, 2013
Variation: April 12th, 2019
Gene Model: October 24th, 2011
28 days agobde1 bearded-ear1: floral development MADS box transcription factor; recessive mutant has silky-polytypic-like ear
5.06
   Luo, HS et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00043   AT2G45650 (TAIR) Reference: October 1st, 2020
Gene Product: April 1st, 2011
Variation: October 5th, 2009
28 days agosbp3 (GRASSIUS) SBP-transcription factor 3: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
4.03
GRMZM2G106798
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 5th, 2019
Gene Model: June 11th, 2018
28 days agosi1 silky1: (aka ts8, ms-si) multiple silks in ear; sterile tassel with silks
6.01
   Luo, HS et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00043     Reference: October 1st, 2020
Variation: November 2nd, 2015
28 days agofgs1 ferredoxin-dependent glutamate synthase1: deduced amino acid sequence homologous with E. coli NADPH-glutamate synthase, single copy by Southern blot analysis
7.05
   Li, Z et al. 2020. Plant Cell pp.doi: 10.1105/tpc.20.00320     Reference: October 1st, 2020
Gene Product: September 1st, 2003
Variation: July 24th, 2015
28 days agobx8 benzoxazinone synthesis8: cytosolic glucosyltransferase; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings
4.01
GRMZM2G085054
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: October 20th, 2011
Variation: October 31st, 2011
Gene Model: October 20th, 2011
28 days agobx9 benzoxazinone synthesis9: cytosolic glucosyl transferase; redundant with bx8; synthesis of cyclic hydroxamates/DIMBOA; insect resistance in young seedlings
1.06
GRMZM2G161335
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: October 20th, 2011
Variation: October 27th, 2011
Gene Model: October 20th, 2011
28 days agompk7 MAP kinase7:
 
GRMZM2G002100
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 12th, 2013
Variation: January 18th, 2013
Gene Model: July 9th, 2013
28 days agopin10 PIN-formed protein10: similar to Arabidopsis PIN10 (Forestan et al 2012)
 
GRMZM2G126260
Han, QH et al. 2020. Plant Breed pp.doi: 10.1111/pbr.12864     Reference: October 1st, 2020
Gene Product: April 21st, 2014
Gene Model: January 24th, 2013
28 days agobx10 benzoxazinone synthesis10:
 
GRMZM2G311036
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 8th, 2013
Gene Model: July 8th, 2013
28 days agobx11 benzoxazinone synthesis11:
 
GRMZM2G336824
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 8th, 2013
Gene Model: July 8th, 2013
28 days agobx12 benzoxazinone synthesis12:
 
GRMZM2G023325
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 8th, 2013
Variation: July 8th, 2013
Gene Model: July 8th, 2013
28 days agobx13 benzoxazinone synthesis13: encodes a 2-oxoglutarate-dependent dioxygenase that catalyzes the conversion of DIMBOA-Glc into a new benzoxazinoid intermediate (TRIMBOA-Glc) by an uncommon reaction involving a hydroxylation and a likely ortho-rearrangement of a methoxy group.
 
AC148152.3_FG005
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: June 20th, 2016
Variation: June 20th, 2016
Gene Model: June 20th, 2016
28 days agobx6 benzoxazinone synthesis6: cytosolic 2-oxoglutarate-dependent dioxygenase; synthesis of cyclohydroxamates/DIMBOA; insect resistance in young seedlings; SSR umc1232
4.01
   Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: June 20th, 2016
Variation: April 12th, 2019
28 days agompk3 MAP kinase3: transcript and protein activity upregulated by ABA and H2O2
1.03
GRMZM2G017792
Zhang, CP et al. 2020. New Phytol pp.doi: 10.1111/nph.16974     Reference: October 1st, 2020
Gene Product: July 9th, 2013
Variation: July 12th, 2013
Gene Model: July 9th, 2013
29 days agons2 narrow sheath2: embryonic transcription factor; duplicate factor with ns1; closely related to 2 other WOX3 genes, wox3a and wox3b, aka hb82, hb16 (Grassius named)
4.08
   Conklin, PA et al. 2020. Development pp.doi: 10.1242/dev.193623     Reference: September 30th, 2020
Gene Product: August 25th, 2017
Variation: June 29th, 2005
29 days agoga2ox6 gibberellin 2-oxidase6:
6.05
   Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Gene Product: October 27th, 2014
29 days agorf3 restorer of fertility3: dominant Rf3 restores fertility to cms-S
2.09
   Qin, XN et al. 2020. PeerJ doi: 10.7717/peerj.10015     Reference: September 30th, 2020
Gene Product: December 27th, 2016
Variation: September 1st, 2003
29 days agoremo4 remorin4:
7.04
GRMZM2G081949
Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Variation: September 1st, 2003
Gene Model: September 11th, 2018
29 days agohsftf4 HSF-transcription factor 4: Locus designated and assigned to a transcription factor family by the GRASSIUS project (Yilmaz et al 2009) , which also provided the mappings to the B73_Reference Genome sequence v2 gene models.
 
   Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Gene Product: May 15th, 2020
29 days agoumc1653  :
6.07
GRMZM2G438895
Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Variation: September 1st, 2003
Gene Model: August 30th, 2018
29 days agopsan2 photosystem I N subunit2:
10.03
GRMZM2G009048
Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Gene Product: September 1st, 2003
Gene Model: January 10th, 2018
29 days agons1 narrow sheath1: plant brachytic, duplicate factor with ns2; leaf sheath and blade taper, blade widens toward tip; husks narrowed, ears exposed
2.05
   Conklin, PA et al. 2020. Development pp.doi: 10.1242/dev.193623     Reference: September 30th, 2020
Gene Product: August 25th, 2017
Variation: February 20th, 2015
29 days agonac1 NaCl stress protein1: encodes small plama membrane proteolipid involved in ion homeostasis, and response to salinity
10.04
   Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Gene Product: September 1st, 2003
Variation: September 1st, 2003
29 days agomsh1 male sterile protein homolog1: leaf cDNA 6C06C01, similar to Arabidopsis MS2
4.08
GRMZM2G036217
Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Gene Product: September 1st, 2003
Variation: September 1st, 2003
Gene Model: April 4th, 2015
29 days agohsp7 heat shock protein7:
 
GRMZM5G802801
Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Gene Product: September 1st, 2003
Gene Model: January 14th, 2019
29 days agotir2 transport inhibitor response2:
 
GRMZM2G155849
Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Gene Product: July 25th, 2017
Gene Model: May 29th, 2019
29 days agorf10 restoration of fertility10: dominant Rf10 restores fertility to cms-S
 
   Qin, XN et al. 2020. PeerJ doi: 10.7717/peerj.10015     Reference: September 30th, 2020
Variation: September 30th, 2020
29 days agohis401 histone H4 family1:
 
GRMZM2G073275
Conklin, PA et al. 2020. Development pp.doi: 10.1242/dev.193623     Reference: September 30th, 2020
Gene Product: September 1st, 2003
Gene Model: September 30th, 2020
29 days agohis402 histone H4 family2:
 
GRMZM2G084195
Conklin, PA et al. 2020. Development pp.doi: 10.1242/dev.193623     Reference: September 30th, 2020
Gene Product: September 1st, 2003
Gene Model: September 30th, 2020
29 days agohis403 histone H4 family3:
 
GRMZM2G421279
Conklin, PA et al. 2020. Development pp.doi: 10.1242/dev.193623     Reference: September 30th, 2020
Gene Product: September 1st, 2003
Gene Model: September 30th, 2020
29 days agohis404 histone H4 family4:
 
GRMZM2G072855
Conklin, PA et al. 2020. Development pp.doi: 10.1242/dev.193623     Reference: September 30th, 2020
Gene Product: September 1st, 2003
Gene Model: September 30th, 2020
29 days agohis406 histone H4 family6:
 
GRMZM2G181153
Philipps, G et al. 1986. Gene 42:225-229     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: September 30th, 2020
29 days agohis301 histone H3 family1:
 
GRMZM2G401581
Chaubet, N. 1986. Plant Mol Biol 6:253-263     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: September 30th, 2020
29 days agohis407 histone H4 family7:
 
GRMZM2G349651
Philipps, G et al. 1986. Gene 42:225-229     Reference: September 1st, 2003
Gene Product: September 1st, 2003
Gene Model: September 30th, 2020
29 days agopin1 PIN-formed protein1: gene product cross-reacts with anti-AtPIN1 antibody and in tassel and ear, the PIN proteins are localized to a group of cells in subepidermal meristematic layers.
9.01
GRMZM2G398650
Sowinski, P et al. 2020. Frontiers Plant Sci 11:576941     Reference: September 30th, 2020
Gene Product: April 21st, 2014
Variation: January 20th, 2015
Gene Model: June 7th, 2012

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