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Information about assembly Zm-Mo17-REFERENCE-YAN-1.0
(also known as Mo17)
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Click
here
to learn about maize genome and gene model nomenclature rules.
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Genome Sequencing Project Information |
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The draft genome of Zea mays ssp. mays, Mo17 was resequenced using PacBio Single Molecule Real-Time technology and Illumina HiSeq 2000. |
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GenBank BioProject |
PRJNA299869 |
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Project PI |
Jianbing Yan |
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Project start date |
2014 |
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Release date |
'Nov, 2017 |
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Browse Genome |
Genome browser at MaizeGDB |
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Publication status |
Published |
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Project reference |
Contributions of Zea mays subspecies mexicana haplotypes to modern maize..
Ning Yang, Xi-Wen Xu, Rui-Ru Wang, Wen-Lei Peng, Lichun Cai, Jia-Ming Song, Wenqiang Li, Xin Luo, Luyao Niu, Yuebin Wang, Min Jin, Lu Chen, Jingyun Luo, Min Deng, Long Wang, Qingchun Pan, Feng Liu, David Jackson, Xiaohong Yang, Ling-Ling Chen, Jianbing Yan
DOI
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Stock and Biosample Information |
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| Stock information |
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Stock name |
PI 558532 - Yan lab |
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Stock record |
47846 |
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Stock details |
PI 558532 - Yan lab |
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Stock provided by |
Huazhong Agricultrual University |
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| Biosample information |
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GenBank BioSample |
SAMN04216913 |
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Sample description |
TM population are planted in Sanya, Hainan. The leaf of seedlings are collected |
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Collection date |
2014 |
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Collected by |
Dr. Wenqiang Li |
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Plant structure |
leaf of seedlings |
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Sequencing and Assembly Information |
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Assembly name |
Zm-Mo17-REFERENCE-YAN-1.0 |
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WGS accession |
LMUZ00000000 |
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Sequencing description |
Sequencing technologies: Illumina, Pacific Biosciences
Sequencing method: PacBio Single Molecule Real-Time sequencing, Hiseq 2000 |
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Assembly description |
Assembly methods: DenovoMAGIC 2
Construction of pseudomolecules: By genetic map |
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Browse Genome |
Genome browser at MaizeGDB |
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Release date |
'Nov, 2017 |
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Sequencing method |
Illumina, Pacific Biosciences |
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Finishing strategy |
Complete genome, >120X coverage |
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Genome coverage |
>120X |
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| Assembly statistics |
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Scaff num |
48,268 |
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Perc seq unscaffold |
2,005,908,899 |
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Total scaff length |
26,086,894 bp |
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Shortest scaff |
500 bp |
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N50 scaff length |
60,508 bp |
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N50 contig length |
60,508 bp |
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Total number of scaffolds in assembly.
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% assembly in UNscaffolded contigs.
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Total sequence length represented by scaffolds.
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Shortest scaffold in assembly.
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The length of scaffold which takes the sum length (summing from longest to shortest scaffold) past 50% of the total assembly size.
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The length of contig which takes the sum length (summing from longest to shortest contig) past 50% of the total assembly size.
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A contig is a contiguous consensus sequence that is
derived from a collection of overlapping reads.
A scaffold is set of a ordered and orientated contigs
that are linked to one another by mate pairs of sequencing reads.
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Annotation |
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Annotation Identifier |
Zm00009a.1 |
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