Home > Diversity, SNPs, and Traits
|
Diversity, SNP, and Trait Data at MaizeGDB
|
|
About diversity, SNP, and trait data at MaizeGDB
MaizeGDB is working with
the
Schnable lab,
the Panzea project,
The Genome Reference Consortium,
and iPlant
Collaborative to
create a plan for archiving, dessiminating,
visualizing, and analyzing diversity data.
Please contact us if you are preparing a
proposal for a project that will generate diversity data.
|
Search
SNPversity
allows you to compare SNPs across a diverse selection of inbred lines.
Search genotype data at Panzea.
Search GBS data at Panzea.
TYPSimSelector: Sort lines from
the Ames Diversity Panel based on IBS (Identity by State) score.
|
Types of variation data
- Single Nucleotide Polymorphisms (SNPs), including
insertions and deletions.
- Copy Number Variations (CNVs).
- Presence/Absence Variations (PAVs).
- Complex alleles. (also called "alternative loci")
- Sequences which do not align to the reference genome.
- Inversion break points.
- Phenotypes.
- Germplasm via GRIN.
- Transcript assemblies and exome contigs alignments.
- Transcript assemblies and exome contigs sequences at GenBank.
- Expression data at GEO, SRA, and other repositories.
- Genetic maps.
|
Information for contributers
If you wish to submit diversity, SNP, or trait data to MaizeGDB,
contact us.
|
Downloads
|
Genome browser tracks
Aligned data is available as tracks on the MaizeGDB
Genome Browser.
These tracks are available:
-
HapMap1 and HapMap2 from Panzea
-
Mo17 SNPs and Indels from JGI
-
Palomero toluqueño contigs
-
GBS v2.7
|
Projects
A list of projects and resources related to maize diversity is available
here.
|
|
|
|