All Gene Models with open Issues

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Issue Gene model Version Description Resolution Status
ASMBLY-1067 AC152495.1_FG002 RefGen_B73 v2 5' and 3' UTR exons of gene rp1 are missing in B73_V2 gene model AC152495.1_FG002; based on Genbank sequence accession AF107293 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1097 AC205274.3_FG001 RefGen_B73 v2 UTRs of gene prp1 are unannotated in B73_V2 gene model AC205274.3_FG001; based on Genbank sequence accession X54325 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1065 AC206941.2_FG002 RefGen_B73 v2 3' UTR of ole3 is split between two models with ole3 CDS assigned to B73_V2 gene model AC206941.2_FG002; based on Genbank sequence accession J05212 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1084 AC209208.3_FG002 RefGen_B73 v2 Annotation skips 3' UTR of gene pip1b in B73_V2 gene model AC209208.3_FG002; based on Genbank sequence accession AF131201 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1066 AC214791.2_FG002 RefGen_B73 v2 3' UTR of gene zcn3 is unannotated B73_V2 gene model AC214791.2_FG002; based on Genbank sequence accession EU241935 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1096 AC233943.1_FG002 RefGen_B73 v2 UTR exon of ra2 is skipped in B73_V2 gene model AC233943.1_FG002; based on Genbank sequence accession BT035538 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1078 AC234152.1_FG002 RefGen_B73 v2 Gene kch2 is split into 2 B73_V2 gene models: AC234152.1_FG007|AC234152.1_FG002; based on Genbank sequence accession AJ132686 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1078 AC234152.1_FG007 RefGen_B73 v2 Gene kch2 is split into 2 B73_V2 gene models: AC234152.1_FG007|AC234152.1_FG002; based on Genbank sequence accession AJ132686 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1079 akh1 RefGen_B73 v2 Gene akh1 is split into three B73_V2 gene models: GRMZM2G365423|GRMZM2G389303|GRMZM2G437977; based on Genbank sequence accession L33912 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1088 b1 RefGen_B73 v4 Gene b1 is missing internal exon in sequence associated with B73_V2 gene model GRMZM2G172795; based on Genbank sequence accession X57276 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1105 b1 RefGen_B73 v4 Zm00001d000236, gene b1, is located on contig 44 in Zm-REFERENCE-GRAMENE-4.0, but was located on chromosome 2 as GRMZM2G172795 in B73 RefGen_v3. It should be placed on chromosome 2 instead. Open
ASMBLY-1074 bif2 RefGen_B73 v2 The first exon of gene bif2 has a deletion in B73_V2 gene model GRMZM2G171822; based on Genbank sequence accession EF532402 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1104 brk3 RefGen_B73 v4 The annotation for the brk3 gene is split over several different genes, including GRMZM5G886363 and GRMZM2G180150. The correct CDS sequence has been previously been submitted to yrGATE as well as GenBank (Accession KM603488). We have experimental evidence (i.e., full length cDNA) and multiple mutant alleles proving that the annotation for the CDS in Genbank is correct, which is presented in Facette et al (2015) Nature Plants 1:14024. (doi:10.1038/nplants.2014.24) This annotation error does not appear to be fully corrected in AGPv4. Open
ASMBLY-1096 BT035538 RefGen_B73 v2 UTR exon of ra2 is skipped in B73_V2 gene model AC233943.1_FG002; based on Genbank sequence accession BT035538 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1085 c1 RefGen_B73 v2 Gene c1 is missing 3' UTR in B73_V2 gene model GRMZM2G005066; based on Genbank sequence accession X52201 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1090 chr3:41183262 RefGen_B73 v2 Gene cyc2 has no gene model B73_V2 gene model chr3:41183262; based on Genbank sequence accession U10077 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1089 chr3:58008644 RefGen_B73 v2 Gene tha1 has no gene model B73_V2 gene model chr3:58008644; based on Genbank sequence accession U71123 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1091 chr4:47715993 RefGen_B73 v2 Gene dsc1 has no gene model B73_V2 gene model chr4:47715993; based on Genbank sequence accession AF006498 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Reopened
ASMBLY-1090 cyc2 RefGen_B73 v2 Gene cyc2 has no gene model B73_V2 gene model chr3:41183262; based on Genbank sequence accession U10077 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1091 dsc1 RefGen_B73 v2 Gene dsc1 has no gene model B73_V2 gene model chr4:47715993; based on Genbank sequence accession AF006498 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Reopened
ASMBLY-1093 GRMZM2G005024 RefGen_B73 v2 Gene orp2 appears split into two transcripts associated with B73_V2 gene model GRMZM2G005024; based on Genbank sequence accession M76685 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1085 GRMZM2G005066 RefGen_B73 v2 Gene c1 is missing 3' UTR in B73_V2 gene model GRMZM2G005066; based on Genbank sequence accession X52201 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1081 GRMZM2G008913 RefGen_B73 v2 There is an inversion in nongene sequence downstream of B73_V2 gene model GRMZM2G008913; based on Genbank sequence accession X58700 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1116 GRMZM2G032070 RefGen_B73 v3 Open
ASMBLY-1095 GRMZM2G034157 RefGen_B73 v2 Upstream UTR for gene hsp18c is missing from B73_V2 gene model GRMZM2G034157; based on Genbank sequence accession X54075 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1076 GRMZM2G089713 RefGen_B73 v2 Gene sh1 is depicited with extra 5' UTR in B73_V2 gene model GRMZM2G089713; based on Genbank sequence accession X02400 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1063 GRMZM2G090718 RefGen_B73 v2 Half of 3' end of ppp1 is missing from B73_V2 gene model GRMZM2G090718; based on Genbank sequence accession T18800 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1116 GRMZM2G099522 RefGen_B73 v3 Open
ASMBLY-1083 GRMZM2G124532 RefGen_B73 v2 CDS for gene phyB1 may have an insertion into an exon; it starts too late in B73_V2 gene model GRMZM2G124532; based on Genbank sequence accession DQ307579 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1112 GRMZM2G135283 RefGen_B73 v4 GRMZM2G135283 (serine transhydroxymethyltransferase) is missing in B73_V4. Open
ASMBLY-1086 GRMZM2G138060 RefGen_B73 v2 Gene su1 may be missing 5' coding region in B73_V2 gene model GRMZM2G138060; based on Genbank sequence accession U18908 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1074 GRMZM2G171822 RefGen_B73 v2 The first exon of gene bif2 has a deletion in B73_V2 gene model GRMZM2G171822; based on Genbank sequence accession EF532402 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1088 GRMZM2G172795 RefGen_B73 v4 Gene b1 is missing internal exon in sequence associated with B73_V2 gene model GRMZM2G172795; based on Genbank sequence accession X57276 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1104 GRMZM2G180150 RefGen_B73 v4 The annotation for the brk3 gene is split over several different genes, including GRMZM5G886363 and GRMZM2G180150. The correct CDS sequence has been previously been submitted to yrGATE as well as GenBank (Accession KM603488). We have experimental evidence (i.e., full length cDNA) and multiple mutant alleles proving that the annotation for the CDS in Genbank is correct, which is presented in Facette et al (2015) Nature Plants 1:14024. (doi:10.1038/nplants.2014.24) This annotation error does not appear to be fully corrected in AGPv4. Open
ASMBLY-1098 GRMZM2G317406 RefGen_B73 v2 Gene mgs1 has a weird B73_V2 gene model GRMZM2G317406; based on Genbank sequence accession S44171 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1070 GRMZM2G348551 RefGen_B73 v2 5' UTR and upsteam sequence of gene su2 are missing for B73_V2 gene model GRMZM2G348551; based on Genbank sequence accession AY499410 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1082 GRMZM2G354335 RefGen_B73 v2 Gene meg1 shows extra exons in B73_V2 gene model GRMZM2G354335; based on Genbank sequence accession AY536120 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1079 GRMZM2G365423 RefGen_B73 v2 Gene akh1 is split into three B73_V2 gene models: GRMZM2G365423|GRMZM2G389303|GRMZM2G437977; based on Genbank sequence accession L33912 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1079 GRMZM2G389303 RefGen_B73 v2 Gene akh1 is split into three B73_V2 gene models: GRMZM2G365423|GRMZM2G389303|GRMZM2G437977; based on Genbank sequence accession L33912 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1075 GRMZM2G429899 RefGen_B73 v2 Gene sh2 is depicted with extra (coding)exons in B73_V2 gene model GRMZM2G429899; based on Genbank sequence accession M81603 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1079 GRMZM2G437977 RefGen_B73 v2 Gene akh1 is split into three B73_V2 gene models: GRMZM2G365423|GRMZM2G389303|GRMZM2G437977; based on Genbank sequence accession L33912 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1104 GRMZM5G886363 RefGen_B73 v4 The annotation for the brk3 gene is split over several different genes, including GRMZM5G886363 and GRMZM2G180150. The correct CDS sequence has been previously been submitted to yrGATE as well as GenBank (Accession KM603488). We have experimental evidence (i.e., full length cDNA) and multiple mutant alleles proving that the annotation for the CDS in Genbank is correct, which is presented in Facette et al (2015) Nature Plants 1:14024. (doi:10.1038/nplants.2014.24) This annotation error does not appear to be fully corrected in AGPv4. Open
ASMBLY-1095 hsp18c RefGen_B73 v2 Upstream UTR for gene hsp18c is missing from B73_V2 gene model GRMZM2G034157; based on Genbank sequence accession X54075 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1065 J05212 RefGen_B73 v2 3' UTR of ole3 is split between two models with ole3 CDS assigned to B73_V2 gene model AC206941.2_FG002; based on Genbank sequence accession J05212 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1078 kch2 RefGen_B73 v2 Gene kch2 is split into 2 B73_V2 gene models: AC234152.1_FG007|AC234152.1_FG002; based on Genbank sequence accession AJ132686 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1079 L33912 RefGen_B73 v2 Gene akh1 is split into three B73_V2 gene models: GRMZM2G365423|GRMZM2G389303|GRMZM2G437977; based on Genbank sequence accession L33912 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1093 M76685 RefGen_B73 v2 Gene orp2 appears split into two transcripts associated with B73_V2 gene model GRMZM2G005024; based on Genbank sequence accession M76685 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1075 M81603 RefGen_B73 v2 Gene sh2 is depicted with extra (coding)exons in B73_V2 gene model GRMZM2G429899; based on Genbank sequence accession M81603 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1082 meg1 RefGen_B73 v2 Gene meg1 shows extra exons in B73_V2 gene model GRMZM2G354335; based on Genbank sequence accession AY536120 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1098 mgs1 RefGen_B73 v2 Gene mgs1 has a weird B73_V2 gene model GRMZM2G317406; based on Genbank sequence accession S44171 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1065 ole3 RefGen_B73 v2 3' UTR of ole3 is split between two models with ole3 CDS assigned to B73_V2 gene model AC206941.2_FG002; based on Genbank sequence accession J05212 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1093 orp2 RefGen_B73 v2 Gene orp2 appears split into two transcripts associated with B73_V2 gene model GRMZM2G005024; based on Genbank sequence accession M76685 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1083 phyB1 RefGen_B73 v2 CDS for gene phyB1 may have an insertion into an exon; it starts too late in B73_V2 gene model GRMZM2G124532; based on Genbank sequence accession DQ307579 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1084 pip1b RefGen_B73 v2 Annotation skips 3' UTR of gene pip1b in B73_V2 gene model AC209208.3_FG002; based on Genbank sequence accession AF131201 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1063 ppp1 RefGen_B73 v2 Half of 3' end of ppp1 is missing from B73_V2 gene model GRMZM2G090718; based on Genbank sequence accession T18800 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1097 prp1 RefGen_B73 v2 UTRs of gene prp1 are unannotated in B73_V2 gene model AC205274.3_FG001; based on Genbank sequence accession X54325 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1096 ra2 RefGen_B73 v2 UTR exon of ra2 is skipped in B73_V2 gene model AC233943.1_FG002; based on Genbank sequence accession BT035538 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1067 rp1 RefGen_B73 v2 5' and 3' UTR exons of gene rp1 are missing in B73_V2 gene model AC152495.1_FG002; based on Genbank sequence accession AF107293 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1098 S44171 RefGen_B73 v2 Gene mgs1 has a weird B73_V2 gene model GRMZM2G317406; based on Genbank sequence accession S44171 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1076 sh1 RefGen_B73 v2 Gene sh1 is depicited with extra 5' UTR in B73_V2 gene model GRMZM2G089713; based on Genbank sequence accession X02400 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1075 sh2 RefGen_B73 v2 Gene sh2 is depicted with extra (coding)exons in B73_V2 gene model GRMZM2G429899; based on Genbank sequence accession M81603 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1086 su1 RefGen_B73 v2 Gene su1 may be missing 5' coding region in B73_V2 gene model GRMZM2G138060; based on Genbank sequence accession U18908 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1070 su2 RefGen_B73 v2 5' UTR and upsteam sequence of gene su2 are missing for B73_V2 gene model GRMZM2G348551; based on Genbank sequence accession AY499410 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1063 T18800 RefGen_B73 v2 Half of 3' end of ppp1 is missing from B73_V2 gene model GRMZM2G090718; based on Genbank sequence accession T18800 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1089 tha1 RefGen_B73 v2 Gene tha1 has no gene model B73_V2 gene model chr3:58008644; based on Genbank sequence accession U71123 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1090 U10077 RefGen_B73 v2 Gene cyc2 has no gene model B73_V2 gene model chr3:41183262; based on Genbank sequence accession U10077 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1086 U18908 RefGen_B73 v2 Gene su1 may be missing 5' coding region in B73_V2 gene model GRMZM2G138060; based on Genbank sequence accession U18908 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1089 U71123 RefGen_B73 v2 Gene tha1 has no gene model B73_V2 gene model chr3:58008644; based on Genbank sequence accession U71123 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Open
ASMBLY-1076 X02400 RefGen_B73 v2 Gene sh1 is depicited with extra 5' UTR in B73_V2 gene model GRMZM2G089713; based on Genbank sequence accession X02400 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1085 X52201 RefGen_B73 v2 Gene c1 is missing 3' UTR in B73_V2 gene model GRMZM2G005066; based on Genbank sequence accession X52201 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1095 X54075 RefGen_B73 v2 Upstream UTR for gene hsp18c is missing from B73_V2 gene model GRMZM2G034157; based on Genbank sequence accession X54075 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1097 X54325 RefGen_B73 v2 UTRs of gene prp1 are unannotated in B73_V2 gene model AC205274.3_FG001; based on Genbank sequence accession X54325 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1088 X57276 RefGen_B73 v4 Gene b1 is missing internal exon in sequence associated with B73_V2 gene model GRMZM2G172795; based on Genbank sequence accession X57276 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1081 X58700 RefGen_B73 v2 There is an inversion in nongene sequence downstream of B73_V2 gene model GRMZM2G008913; based on Genbank sequence accession X58700 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1113 yab12 RefGen_B73 v4 Position of the 6th exon appears to be incorrect in the Zm00001d033508 for B73 v4 assembly (Zm-B73-REFERENCE-GRAMENE-4.0). This may indicate an assembly error, or an error in the gene model, although the latter seems unlikely. Open
ASMBLY-1066 zcn20 RefGen_B73 v2 3' UTR of gene zcn3 is unannotated B73_V2 gene model AC214791.2_FG002; based on Genbank sequence accession EU241935 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand -1 Open
ASMBLY-1105 Zm00001d000236 RefGen_B73 v4 Zm00001d000236, gene b1, is located on contig 44 in Zm-REFERENCE-GRAMENE-4.0, but was located on chromosome 2 as GRMZM2G172795 in B73 RefGen_v3. It should be placed on chromosome 2 instead. Open
ASMBLY-1088 Zm00001d000236 RefGen_B73 v4 Gene b1 is missing internal exon in sequence associated with B73_V2 gene model GRMZM2G172795; based on Genbank sequence accession X57276 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open
ASMBLY-1113 Zm00001d033508 RefGen_B73 v4 Position of the 6th exon appears to be incorrect in the Zm00001d033508 for B73 v4 assembly (Zm-B73-REFERENCE-GRAMENE-4.0). This may indicate an assembly error, or an error in the gene model, although the latter seems unlikely. Open
ASMBLY-1115 Zm00001d039989 RefGen_B73 v4 Appears to be truncated. Corresponding v3 gene model (GRMZM2G129777) is 71bp longer. The longer length has been confirmed via cloning by Lifang Zhang. Open
ASMBLY-1114 Zm00001d049201 RefGen_B73 v4 Missing 5' and 3' untranslated sequence. Open
ASMBLY-1109 Zm00001d051422 RefGen_B73 v4 Missing 5' and 3' untranslated sequence. Open
ASMBLY-1081 zp1 RefGen_B73 v2 There is an inversion in nongene sequence downstream of B73_V2 gene model GRMZM2G008913; based on Genbank sequence accession X58700 (Classical genes list, Schnable J & Freeeling M 2011 PLoS One 108:4069-74 ). Strand 1 Open